Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GPX7 (glutathione peroxidase 7)

Identity

Other namesCL683
FLJ14777
GPX6
NPGPx
HGNC (Hugo) GPX7
Location 1p32.3
Location_base_pair Starts at 52840632 and ends at 52847310 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPX7   4559
Entrez_Gene (NCBI)GPX7  2882  glutathione peroxidase 7
Cards
GeneCards (Weizmann)GPX7
Ensembl (Hinxton)ENSG00000116157 [Gene_View]  GPX7 [Vega]
AceView (NCBI)GPX7
Genatlas (Paris)GPX7
euGene (Indiana)2882
SOURCE (Stanford)NM_015696
Gene Expression (Array Express) ENSG00000116157
Genomic and cartography
GoldenPath (UCSC)GPX7  -  1p32.3   chr1:52840632-52847310 +  1p32.3   [Description]    (hg18-March_2006)
EnsemblGPX7 - 1p32.3 [CytoView]
Mapping of homologs : NCBIGPX7 [Mapview]
OMIM
Gene and transcription
Gene : Genbank (Entrez)AF091092 AF320068 AK027683 AY358402 BC032788
Reference sequence (RefSeq transcript) :SRSNM_015696
Reference transcript : EntrezNM_015696
RefSeq genomic : SRSAC_000044 AC_000133 NC_000001 NT_032977 NW_001838579 NW_921351
RefSeq genomic : EntrezAC_000044 AC_000133 NC_000001 NT_032977 NW_001838579 NW_921351
Consensus coding sequences : CCDS NCBIGPX7
Cluster EST : UnigeneHs.43728 [ SRS ] Hs.43728 [ NCBI ]
Alternative Splicing : Fast-db (Paris)16144
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ96SL4 (SRS) Q96SL4 (Expasy) Q96SL4 (Uniprot)
With graphics : InterProQ96SL4
Splice isoforms : VarSplice FASTAQ96SL4(VarSplice FASTA)
Domaine pattern : Prosite (SRS)GLUTATHIONE_PEROXID_1 (PS00460)    GLUTATHIONE_PEROXID_2 (PS00763)    GLUTATHIONE_PEROXID_3 (PS51355)   
Domain pattern : Prosite (Expaxy)GLUTATHIONE_PEROXID_1 (PS00460)    GLUTATHIONE_PEROXID_2 (PS00763)    GLUTATHIONE_PEROXID_3 (PS51355)   
Domains : Interpro (SRS)Glut_perox_Gpx7    Glutathione_peroxidase    Thioredoxin-like_fold    Thioredoxin_fold   
Domains : Interpro (EBI)Glut_perox_Gpx7    Glutathione_peroxidase    Thioredoxin-like_fold    Thioredoxin_fold   
Related proteins : CluSTrQ96SL4
Domain families : Pfam SRSGSHPx (PF00255)   
Domain families : Pfam SangerGSHPx (PF00255)   
Domain families : Pfam NCBIpfam00255   
Blocks (Seattle)Q96SL4
Crystal structure of protein : PDB SRS2P31   
Crystal structure of protein : PDBSum2P31   
Crystal structure of protein : IMB2P31   
Crystal structure of protein : PDB RSDB2P31   
HPRD13606
Protein Interaction databases
DIP (DOE-UCLA)Q96SL4
IntAct (EBI)Q96SL4
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIGPX7
SNP : GeneSNP UtahGPX7
SNP : HGBaseGPX7
Genetic variants : HAPMAPGPX7
Somatic Mutations in Cancer : COSMICGPX7 
Mutations and Diseases : HGMDGPX7
Hereditary diseases : OMIM
Hereditary diseases : GENETests
Diseases : Genetic AssociationGPX7
General knowledge
Homologs : HomoloGeneGPX7
Homology/Alignments : Family Browser UCSCGPX7
Phylogenetic Trees/Animal Genes : TreeFamGPX7
Catalytic activity : Enzyme1.11.1.9 [ Enzyme-Expasy ]   1.11.1.9 [ Enzyme-SRS ]   1.11.1.9 [ IntEnz-EBI ]   1.11.1.9 [ BRENDA ]   1.11.1.9 [ KEGG ]   
Chemical/Protein Interactions : CTD2882
Keywords Ontology : AmiGOglutathione peroxidase activity  extracellular region  response to oxidative stress  oxidoreductase activity  oxidation reduction  
Keywords Ontology : EGO-EBIglutathione peroxidase activity  extracellular region  response to oxidative stress  oxidoreductase activity  oxidation reduction  
Pathways : BIOCARTA
Pathways : KEGGGlutathione metabolismArachidonic acid metabolism
Other databases
Probes
Probes : ImagenesGPX7 Related clones (RZPD - Berlin)
Literature
PubMed12 Pubmed reference(s) in Entrez
PubGeneGPX7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:45:40 CET 2010
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