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GRAMD2B (GRAM domain containing 2B)

Identity

Alias_namesGRAMD3
GRAM domain containing 3
Alias_symbol (synonym)NS3TP2
FLJ21313
Other alias
HGNC (Hugo) GRAMD2B
LocusID (NCBI) 65983
Atlas_Id 79253
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 126360096 and ends at 126494161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GRAMD2B   24911
Cards
Entrez_Gene (NCBI)GRAMD2B  65983  GRAM domain containing 2B
AliasesGRAMD3; NS3TP2
GeneCards (Weizmann)GRAMD2B
Ensembl hg19 (Hinxton)ENSG00000155324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155324 [Gene_View]  ENSG00000155324 [Sequence]  chr5:126360096-126494161 [Contig_View]  GRAMD2B [Vega]
ICGC DataPortalENSG00000155324
TCGA cBioPortalGRAMD2B
AceView (NCBI)GRAMD2B
Genatlas (Paris)GRAMD2B
WikiGenes65983
SOURCE (Princeton)GRAMD2B
Genetics Home Reference (NIH)GRAMD2B
Genomic and cartography
GoldenPath hg38 (UCSC)GRAMD2B  -     chr5:126360096-126494161 +  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRAMD2B  -     5q23.2   [Description]    (hg19-Feb_2009)
GoldenPathGRAMD2B - 5q23.2 [CytoView hg19]  GRAMD2B - 5q23.2 [CytoView hg38]
ImmunoBaseENSG00000155324
Mapping of homologs : NCBIGRAMD2B [Mapview hg19]  GRAMD2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024966 AK225829 AK293307 AK294656 AK296267
RefSeq transcript (Entrez)NM_001146319 NM_001146320 NM_001146321 NM_001146322 NM_001349541 NM_001349542 NM_001349543 NM_001349544 NM_023927
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRAMD2B
Cluster EST : UnigeneHs.675231 [ NCBI ]
CGAP (NCI)Hs.675231
Alternative Splicing GalleryENSG00000155324
Gene ExpressionGRAMD2B [ NCBI-GEO ]   GRAMD2B [ EBI - ARRAY_EXPRESS ]   GRAMD2B [ SEEK ]   GRAMD2B [ MEM ]
Gene Expression Viewer (FireBrowse)GRAMD2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65983
GTEX Portal (Tissue expression)GRAMD2B
Human Protein AtlasENSG00000155324-GRAMD2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HH9
Splice isoforms : SwissVarQ96HH9
PhosPhoSitePlusQ96HH9
Domains : Interpro (EBI)GRAM    PH-like_dom_sf   
Domain families : Pfam (Sanger)GRAM (PF02893)   
Domain families : Pfam (NCBI)pfam02893   
Domain families : Smart (EMBL)GRAM (SM00568)  
Conserved Domain (NCBI)GRAMD2B
DMDM Disease mutations65983
Blocks (Seattle)GRAMD2B
SuperfamilyQ96HH9
Human Protein Atlas [tissue]ENSG00000155324-GRAMD2B [tissue]
Peptide AtlasQ96HH9
IPIIPI00305868   IPI01011874   IPI00922695   IPI00922305   IPI00922830   IPI01015182   IPI00964283   IPI00965148   IPI00929462   IPI00922170   IPI00965945   
Protein Interaction databases
DIP (DOE-UCLA)Q96HH9
IntAct (EBI)Q96HH9
FunCoupENSG00000155324
BioGRIDGRAMD2B
STRING (EMBL)GRAMD2B
ZODIACGRAMD2B
Ontologies - Pathways
QuickGOQ96HH9
Ontology : AmiGOprotein binding  cytoplasmic microtubule  identical protein binding  
Ontology : EGO-EBIprotein binding  cytoplasmic microtubule  identical protein binding  
NDEx NetworkGRAMD2B
Atlas of Cancer Signalling NetworkGRAMD2B
Wikipedia pathwaysGRAMD2B
Orthology - Evolution
OrthoDB65983
GeneTree (enSembl)ENSG00000155324
Phylogenetic Trees/Animal Genes : TreeFamGRAMD2B
HOGENOMQ96HH9
Homologs : HomoloGeneGRAMD2B
Homology/Alignments : Family Browser (UCSC)GRAMD2B
Gene fusions - Rearrangements
Fusion : QuiverGRAMD2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAMD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRAMD2B
dbVarGRAMD2B
ClinVarGRAMD2B
1000_GenomesGRAMD2B 
Exome Variant ServerGRAMD2B
ExAC (Exome Aggregation Consortium)ENSG00000155324
GNOMAD BrowserENSG00000155324
Varsome BrowserGRAMD2B
Genetic variants : HAPMAP65983
Genomic Variants (DGV)GRAMD2B [DGVbeta]
DECIPHERGRAMD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRAMD2B 
Mutations
ICGC Data PortalGRAMD2B 
TCGA Data PortalGRAMD2B 
Broad Tumor PortalGRAMD2B
OASIS PortalGRAMD2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGRAMD2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAMD2B
DgiDB (Drug Gene Interaction Database)GRAMD2B
DoCM (Curated mutations)GRAMD2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAMD2B (select a term)
intoGenGRAMD2B
Cancer3DGRAMD2B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGRAMD2B
MedgenGRAMD2B
Genetic Testing Registry GRAMD2B
NextProtQ96HH9 [Medical]
TSGene65983
GENETestsGRAMD2B
Target ValidationGRAMD2B
Huge Navigator GRAMD2B [HugePedia]
snp3D : Map Gene to Disease65983
BioCentury BCIQGRAMD2B
ClinGenGRAMD2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65983
Chemical/Pharm GKB GenePA142671711
Clinical trialGRAMD2B
Miscellaneous
canSAR (ICR)GRAMD2B (select the gene name)
DataMed IndexGRAMD2B
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAMD2B
EVEXGRAMD2B
GoPubMedGRAMD2B
iHOPGRAMD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:30:18 CEST 2019

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