| Nomenclature |
HGNC (Hugo) | GSX1 20374 |
| Cards |
Entrez_Gene (NCBI) | GSX1 219409 GS homeobox 1 |
Aliases | GSH1; Gsh-1 |
GeneCards (Weizmann) | GSX1 |
Ensembl hg19 (Hinxton) | ENSG00000169840 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000169840 [Gene_View]  ENSG00000169840 [Sequence] chr13:27792643-27793952 [Contig_View] GSX1 [Vega] |
ICGC DataPortal | ENSG00000169840 |
TCGA cBioPortal | GSX1 |
AceView (NCBI) | GSX1 |
Genatlas (Paris) | GSX1 |
WikiGenes | 219409 |
SOURCE (Princeton) | GSX1 |
Genetics Home Reference (NIH) | GSX1 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | GSX1 - chr13:27792643-27793952 + 13q12.2 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | GSX1 - 13q12.2 [Description] (hg19-Feb_2009) |
GoldenPath | GSX1 - 13q12.2 [CytoView hg19] GSX1 - 13q12.2 [CytoView hg38] |
ImmunoBase | ENSG00000169840 |
Mapping of homologs : NCBI | GSX1 [Mapview hg19] GSX1 [Mapview hg38] |
OMIM | 616542 |
| Gene and transcription |
Genbank (Entrez) | AB044157 |
RefSeq transcript (Entrez) | NM_145657 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | GSX1 |
Cluster EST : Unigene | Hs.351785 [ NCBI ] |
CGAP (NCI) | Hs.351785 |
Alternative Splicing Gallery | ENSG00000169840 |
Gene Expression | GSX1 [ NCBI-GEO ] GSX1 [ EBI - ARRAY_EXPRESS ]
GSX1 [ SEEK ] GSX1 [ MEM ] |
Gene Expression Viewer (FireBrowse) | GSX1 [ Firebrowse - Broad ] |
SOURCE (Princeton) | Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60] |
Genevestigator | Expression in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 219409 |
GTEX Portal (Tissue expression) | GSX1 |
Human Protein Atlas | ENSG00000169840-GSX1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q9H4S2 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q9H4S2 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q9H4S2 |
Splice isoforms : SwissVar | Q9H4S2 |
PhosPhoSitePlus | Q9H4S2 |
Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom Homeobox_metazoa |
Domain families : Pfam (Sanger) | Homeobox (PF00046) |
Domain families : Pfam (NCBI) | pfam00046 |
Domain families : Smart (EMBL) | HOX (SM00389) |
Conserved Domain (NCBI) | GSX1 |
DMDM Disease mutations | 219409 |
Blocks (Seattle) | GSX1 |
Superfamily | Q9H4S2 |
Human Protein Atlas [tissue] | ENSG00000169840-GSX1 [tissue] |
Peptide Atlas | Q9H4S2 |
HPRD | 11016 |
IPI | IPI00028199 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q9H4S2 |
IntAct (EBI) | Q9H4S2 |
FunCoup | ENSG00000169840 |
BioGRID | GSX1 |
STRING (EMBL) | GSX1 |
ZODIAC | GSX1 |
| Ontologies - Pathways |
QuickGO | Q9H4S2 |
Ontology : AmiGO | RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific nucleus nucleus regulation of transcription by RNA polymerase II central nervous system development spinal cord association neuron differentiation hypothalamus development adenohypophysis development neuron differentiation sequence-specific DNA binding positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II neuron fate commitment |
Ontology : EGO-EBI | RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific nucleus nucleus regulation of transcription by RNA polymerase II central nervous system development spinal cord association neuron differentiation hypothalamus development adenohypophysis development neuron differentiation sequence-specific DNA binding positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II neuron fate commitment |
NDEx Network | GSX1 |
Atlas of Cancer Signalling Network | GSX1 |
Wikipedia pathways | GSX1 |
| Orthology - Evolution |
OrthoDB | 219409 |
GeneTree (enSembl) | ENSG00000169840 |
Phylogenetic Trees/Animal Genes : TreeFam | GSX1 |
HOGENOM | Q9H4S2 |
Homologs : HomoloGene | GSX1 |
Homology/Alignments : Family Browser (UCSC) | GSX1 |
| Gene fusions - Rearrangements |
Fusion : Quiver | GSX1 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | GSX1 [hg38] |
dbSNP Single Nucleotide Polymorphism (NCBI) | GSX1 |
dbVar | GSX1 |
ClinVar | GSX1 |
1000_Genomes | GSX1 |
Exome Variant Server | GSX1 |
ExAC (Exome Aggregation Consortium) | ENSG00000169840 |
GNOMAD Browser | ENSG00000169840 |
Varsome Browser | GSX1 |
Genetic variants : HAPMAP | 219409 |
Genomic Variants (DGV) | GSX1 [DGVbeta] |
DECIPHER | GSX1 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | GSX1 |
| Mutations |
ICGC Data Portal | GSX1 |
TCGA Data Portal | GSX1 |
Broad Tumor Portal | GSX1 |
OASIS Portal | GSX1 [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | GSX1 [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | GSX1 |
Mutations and Diseases : HGMD | GSX1 |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search GSX1 |
DgiDB (Drug Gene Interaction Database) | GSX1 |
DoCM (Curated mutations) | GSX1 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | GSX1 (select a term) |
intoGen | GSX1 |
Cancer3D | GSX1(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 616542 |
Orphanet | |
DisGeNET | GSX1 |
Medgen | GSX1 |
Genetic Testing Registry | GSX1
|
NextProt | Q9H4S2 [Medical] |
TSGene | 219409 |
GENETests | GSX1 |
Target Validation | GSX1 |
Huge Navigator |
GSX1 [HugePedia] |
snp3D : Map Gene to Disease | 219409 |
BioCentury BCIQ | GSX1 |
ClinGen | GSX1 |
| Clinical trials, drugs, therapy |
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Chemical/Protein Interactions : CTD | 219409 |
Chemical/Pharm GKB Gene | PA162390373 |
Clinical trial | GSX1 |
| Miscellaneous |
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canSAR (ICR) | GSX1 (select the gene name) |
DataMed Index | GSX1 |
| Probes |
---|
| Litterature |
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PubMed | 8 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
CoreMine | GSX1 |
EVEX | GSX1 |
GoPubMed | GSX1 |
iHOP | GSX1 |