| Nomenclature |
|---|
| HGNC (Hugo) | GSX1 20374 |
| Cards |
|---|
| Entrez_Gene (NCBI) | GSX1 219409 GS homeobox 1 |
| Aliases | GSH1; Gsh-1 |
| GeneCards (Weizmann) | GSX1 |
| Ensembl hg19 (Hinxton) | ENSG00000169840 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000169840 [Gene_View] ENSG00000169840 [Sequence] chr13:27792643-27793952 [Contig_View] GSX1 [Vega] |
| ICGC DataPortal | ENSG00000169840 |
| TCGA cBioPortal | GSX1 |
| AceView (NCBI) | GSX1 |
| Genatlas (Paris) | GSX1 |
| WikiGenes | 219409 |
| SOURCE (Princeton) | GSX1 |
| Genetics Home Reference (NIH) | GSX1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | GSX1 - chr13:27792643-27793952 + 13q12.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | GSX1 - 13q12.2 [Description] (hg19-Feb_2009) |
| GoldenPath | GSX1 - 13q12.2 [CytoView hg19] GSX1 - 13q12.2 [CytoView hg38] |
| ImmunoBase | ENSG00000169840 |
| Mapping of homologs : NCBI | GSX1 [Mapview hg19] GSX1 [Mapview hg38] |
| OMIM | 616542 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB044157 |
| RefSeq transcript (Entrez) | NM_145657 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | GSX1 |
| Cluster EST : Unigene | Hs.351785 [ NCBI ] |
| CGAP (NCI) | Hs.351785 |
| Alternative Splicing Gallery | ENSG00000169840 |
| Gene Expression | GSX1 [ NCBI-GEO ] GSX1 [ EBI - ARRAY_EXPRESS ]
GSX1 [ SEEK ] GSX1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | GSX1 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 219409 |
| GTEX Portal (Tissue expression) | GSX1 |
| Human Protein Atlas | ENSG00000169840-GSX1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9H4S2 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9H4S2 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9H4S2 |
| Splice isoforms : SwissVar | Q9H4S2 |
| PhosPhoSitePlus | Q9H4S2 |
| Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom Homeobox_metazoa |
| Domain families : Pfam (Sanger) | Homeobox (PF00046) |
| Domain families : Pfam (NCBI) | pfam00046 |
| Domain families : Smart (EMBL) | HOX (SM00389) |
| Conserved Domain (NCBI) | GSX1 |
| DMDM Disease mutations | 219409 |
| Blocks (Seattle) | GSX1 |
| Superfamily | Q9H4S2 |
| Human Protein Atlas [tissue] | ENSG00000169840-GSX1 [tissue] |
| Peptide Atlas | Q9H4S2 |
| HPRD | 11016 |
| IPI | IPI00028199 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9H4S2 |
| IntAct (EBI) | Q9H4S2 |
| FunCoup | ENSG00000169840 |
| BioGRID | GSX1 |
| STRING (EMBL) | GSX1 |
| ZODIAC | GSX1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9H4S2 |
| Ontology : AmiGO | RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific nucleus nucleus regulation of transcription by RNA polymerase II central nervous system development spinal cord association neuron differentiation hypothalamus development adenohypophysis development neuron differentiation sequence-specific DNA binding positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II neuron fate commitment |
| Ontology : EGO-EBI | RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific nucleus nucleus regulation of transcription by RNA polymerase II central nervous system development spinal cord association neuron differentiation hypothalamus development adenohypophysis development neuron differentiation sequence-specific DNA binding positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II neuron fate commitment |
| NDEx Network | GSX1 |
| Atlas of Cancer Signalling Network | GSX1 |
| Wikipedia pathways | GSX1 |
| Orthology - Evolution |
|---|
| OrthoDB | 219409 |
| GeneTree (enSembl) | ENSG00000169840 |
| Phylogenetic Trees/Animal Genes : TreeFam | GSX1 |
| HOGENOM | Q9H4S2 |
| Homologs : HomoloGene | GSX1 |
| Homology/Alignments : Family Browser (UCSC) | GSX1 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | GSX1 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | GSX1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | GSX1 |
| dbVar | GSX1 |
| ClinVar | GSX1 |
| 1000_Genomes | GSX1 |
| Exome Variant Server | GSX1 |
| ExAC (Exome Aggregation Consortium) | ENSG00000169840 |
| GNOMAD Browser | ENSG00000169840 |
| Varsome Browser | GSX1 |
| Genetic variants : HAPMAP | 219409 |
| Genomic Variants (DGV) | GSX1 [DGVbeta] |
| DECIPHER | GSX1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | GSX1 |
| Mutations |
|---|
| ICGC Data Portal | GSX1 |
| TCGA Data Portal | GSX1 |
| Broad Tumor Portal | GSX1 |
| OASIS Portal | GSX1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | GSX1 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | GSX1 |
| Mutations and Diseases : HGMD | GSX1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search GSX1 |
| DgiDB (Drug Gene Interaction Database) | GSX1 |
| DoCM (Curated mutations) | GSX1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | GSX1 (select a term) |
| intoGen | GSX1 |
| Cancer3D | GSX1(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 616542 |
| Orphanet | |
| DisGeNET | GSX1 |
| Medgen | GSX1 |
| Genetic Testing Registry | GSX1
|
| NextProt | Q9H4S2 [Medical] |
| TSGene | 219409 |
| GENETests | GSX1 |
| Target Validation | GSX1 |
| Huge Navigator |
GSX1 [HugePedia] |
| snp3D : Map Gene to Disease | 219409 |
| BioCentury BCIQ | GSX1 |
| ClinGen | GSX1 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 219409 |
| Chemical/Pharm GKB Gene | PA162390373 |
| Clinical trial | GSX1 |
| Miscellaneous |
|---|
| canSAR (ICR) | GSX1 (select the gene name) |
| DataMed Index | GSX1 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 8 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | GSX1 |
| EVEX | GSX1 |
| GoPubMed | GSX1 |
| iHOP | GSX1 |
