Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GTDC1 (glycosyltransferase like domain containing 1)

Identity

Alias_namesglycosyltransferase-like domain containing 1
Alias_symbol (synonym)FLJ11753
Hmat-Xa
Other aliasmat-Xa
HGNC (Hugo) GTDC1
LocusID (NCBI) 79712
Atlas_Id 52578
Location 2q22.3  [Link to chromosome band 2q22]
Location_base_pair Starts at 143946014 and ends at 144237339 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJC1 (10p12.31) / GTDC1 (2q22.3)FARP2 (2q37.3) / GTDC1 (2q22.3)GTDC1 (2q22.3) / GTDC1 (2q22.3)
GTDC1 (2q22.3) / MMACHC (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GTDC1   20887
Cards
Entrez_Gene (NCBI)GTDC1  79712  glycosyltransferase like domain containing 1
AliasesHmat-Xa; mat-Xa
GeneCards (Weizmann)GTDC1
Ensembl hg19 (Hinxton)ENSG00000121964 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121964 [Gene_View]  ENSG00000121964 [Sequence]  chr2:143946014-144237339 [Contig_View]  GTDC1 [Vega]
ICGC DataPortalENSG00000121964
TCGA cBioPortalGTDC1
AceView (NCBI)GTDC1
Genatlas (Paris)GTDC1
WikiGenes79712
SOURCE (Princeton)GTDC1
Genetics Home Reference (NIH)GTDC1
Genomic and cartography
GoldenPath hg38 (UCSC)GTDC1  -     chr2:143946014-144237339 -  2q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTDC1  -     2q22.3   [Description]    (hg19-Feb_2009)
GoldenPathGTDC1 - 2q22.3 [CytoView hg19]  GTDC1 - 2q22.3 [CytoView hg38]
ImmunoBaseENSG00000121964
Mapping of homologs : NCBIGTDC1 [Mapview hg19]  GTDC1 [Mapview hg38]
OMIM610165   
Gene and transcription
Genbank (Entrez)AB112440 AB201269 AB597184 AF086278 AF086434
RefSeq transcript (Entrez)NM_001006636 NM_001164629 NM_001284233 NM_001284234 NM_001284235 NM_001284238 NM_001354350 NM_001354351 NM_001354352 NM_001354353 NM_001354354 NM_001354355 NM_001354356 NM_001354358 NM_001354360 NM_001354361 NM_001354362 NM_001376306 NM_001376307 NM_001376308 NM_001376309 NM_001376310 NM_001376311 NM_001376312 NM_001376313 NM_001376314 NM_001376315 NM_001376316 NM_001376317 NM_001376318 NM_001376319 NM_001376320 NM_001376321 NM_001376322 NM_001376323 NM_001376324 NM_001376325 NM_001376326 NM_001376327 NM_001376328 NM_001376329 NM_001376330 NM_001376331 NM_001376332 NM_024659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTDC1
Alternative Splicing GalleryENSG00000121964
Gene ExpressionGTDC1 [ NCBI-GEO ]   GTDC1 [ EBI - ARRAY_EXPRESS ]   GTDC1 [ SEEK ]   GTDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)GTDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79712
GTEX Portal (Tissue expression)GTDC1
Human Protein AtlasENSG00000121964-GTDC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4AE62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4AE62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4AE62
Splice isoforms : SwissVarQ4AE62
PhosPhoSitePlusQ4AE62
Domains : Interpro (EBI)Glyco_trans_1    GlycosylTrfase_1_N   
Domain families : Pfam (Sanger)DUF3524 (PF12038)    Glycos_transf_1 (PF00534)   
Domain families : Pfam (NCBI)pfam12038    pfam00534   
Conserved Domain (NCBI)GTDC1
DMDM Disease mutations79712
Blocks (Seattle)GTDC1
SuperfamilyQ4AE62
Human Protein Atlas [tissue]ENSG00000121964-GTDC1 [tissue]
Peptide AtlasQ4AE62
HPRD13615
IPIIPI00641369   IPI00413909   IPI00871348   IPI00022960   IPI00917913   IPI00922280   IPI00917622   IPI00953259   IPI00915986   IPI01012040   
Protein Interaction databases
DIP (DOE-UCLA)Q4AE62
IntAct (EBI)Q4AE62
FunCoupENSG00000121964
BioGRIDGTDC1
STRING (EMBL)GTDC1
ZODIACGTDC1
Ontologies - Pathways
QuickGOQ4AE62
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGTDC1
Atlas of Cancer Signalling NetworkGTDC1
Wikipedia pathwaysGTDC1
Orthology - Evolution
OrthoDB79712
GeneTree (enSembl)ENSG00000121964
Phylogenetic Trees/Animal Genes : TreeFamGTDC1
HOGENOMQ4AE62
Homologs : HomoloGeneGTDC1
Homology/Alignments : Family Browser (UCSC)GTDC1
Gene fusions - Rearrangements
Fusion : QuiverGTDC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTDC1
dbVarGTDC1
ClinVarGTDC1
1000_GenomesGTDC1 
Exome Variant ServerGTDC1
ExAC (Exome Aggregation Consortium)ENSG00000121964
GNOMAD BrowserENSG00000121964
Varsome BrowserGTDC1
Genetic variants : HAPMAP79712
Genomic Variants (DGV)GTDC1 [DGVbeta]
DECIPHERGTDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTDC1 
Mutations
ICGC Data PortalGTDC1 
TCGA Data PortalGTDC1 
Broad Tumor PortalGTDC1
OASIS PortalGTDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGTDC1
Mutations and Diseases : HGMDGTDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTDC1
DgiDB (Drug Gene Interaction Database)GTDC1
DoCM (Curated mutations)GTDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTDC1 (select a term)
intoGenGTDC1
Cancer3DGTDC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610165   
Orphanet
DisGeNETGTDC1
MedgenGTDC1
Genetic Testing Registry GTDC1
NextProtQ4AE62 [Medical]
TSGene79712
GENETestsGTDC1
Target ValidationGTDC1
Huge Navigator GTDC1 [HugePedia]
snp3D : Map Gene to Disease79712
BioCentury BCIQGTDC1
ClinGenGTDC1
Clinical trials, drugs, therapy
Protein Interactions : CTD79712
Pharm GKB GenePA134892601
Clinical trialGTDC1
Miscellaneous
canSAR (ICR)GTDC1 (select the gene name)
HarmonizomeGTDC1
DataMed IndexGTDC1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTDC1
EVEXGTDC1
GoPubMedGTDC1
iHOPGTDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 20:17:39 CEST 2020
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