Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GUSBP3 (GUSB pseudogene 3)

Identity

Other aliasGUSBP1
SMA3
HGNC (Hugo) GUSBP3
LocusID (NCBI) 653188
Atlas_Id 64124
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69639463 and ends at 69710527 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AOAH (7p14.2) / GUSBP3 (5q13.2)GUSBP3 (5q13.2) / ZNF788 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GUSBP3   37301
Cards
Entrez_Gene (NCBI)GUSBP3  653188  GUSB pseudogene 3
AliasesGUSBP1; SMA3
GeneCards (Weizmann)GUSBP3
Ensembl hg19 (Hinxton)ENSG00000253203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253203 [Gene_View]  ENSG00000253203 [Sequence]  chr5:69639463-69710527 [Contig_View]  GUSBP3 [Vega]
ICGC DataPortalENSG00000253203
TCGA cBioPortalGUSBP3
AceView (NCBI)GUSBP3
Genatlas (Paris)GUSBP3
WikiGenes653188
SOURCE (Princeton)GUSBP3
Genetics Home Reference (NIH)GUSBP3
Genomic and cartography
GoldenPath hg38 (UCSC)GUSBP3  -     chr5:69639463-69710527 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GUSBP3  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathGUSBP3 - 5q13.2 [CytoView hg19]  GUSBP3 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000253203
Mapping of homologs : NCBIGUSBP3 [Mapview hg19]  GUSBP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124130 AK289965 BC051369 BT006760 DT218991
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GUSBP3
Cluster EST : UnigeneHs.654588 [ NCBI ]
CGAP (NCI)Hs.654588
Alternative Splicing GalleryENSG00000253203
Gene ExpressionGUSBP3 [ NCBI-GEO ]   GUSBP3 [ EBI - ARRAY_EXPRESS ]   GUSBP3 [ SEEK ]   GUSBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)GUSBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653188
GTEX Portal (Tissue expression)GUSBP3
Human Protein AtlasENSG00000253203-GUSBP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15486   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15486  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15486
Splice isoforms : SwissVarQ15486
PhosPhoSitePlusQ15486
Domains : Interpro (EBI)Beta-gal/glucu_dom_sf    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GUSBP3
DMDM Disease mutations653188
Blocks (Seattle)GUSBP3
SuperfamilyQ15486
Human Protein Atlas [tissue]ENSG00000253203-GUSBP3 [tissue]
Peptide AtlasQ15486
Protein Interaction databases
DIP (DOE-UCLA)Q15486
IntAct (EBI)Q15486
FunCoupENSG00000253203
BioGRIDGUSBP3
STRING (EMBL)GUSBP3
ZODIACGUSBP3
Ontologies - Pathways
QuickGOQ15486
Ontology : AmiGOskeletal system development  nervous system development  
Ontology : EGO-EBIskeletal system development  nervous system development  
NDEx NetworkGUSBP3
Atlas of Cancer Signalling NetworkGUSBP3
Wikipedia pathwaysGUSBP3
Orthology - Evolution
OrthoDB653188
GeneTree (enSembl)ENSG00000253203
Phylogenetic Trees/Animal Genes : TreeFamGUSBP3
HOGENOMQ15486
Homologs : HomoloGeneGUSBP3
Homology/Alignments : Family Browser (UCSC)GUSBP3
Gene fusions - Rearrangements
Fusion : QuiverGUSBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGUSBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GUSBP3
dbVarGUSBP3
ClinVarGUSBP3
1000_GenomesGUSBP3 
Exome Variant ServerGUSBP3
ExAC (Exome Aggregation Consortium)ENSG00000253203
GNOMAD BrowserENSG00000253203
Varsome BrowserGUSBP3
Genetic variants : HAPMAP653188
Genomic Variants (DGV)GUSBP3 [DGVbeta]
DECIPHERGUSBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGUSBP3 
Mutations
ICGC Data PortalGUSBP3 
TCGA Data PortalGUSBP3 
Broad Tumor PortalGUSBP3
OASIS PortalGUSBP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGUSBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GUSBP3
DgiDB (Drug Gene Interaction Database)GUSBP3
DoCM (Curated mutations)GUSBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GUSBP3 (select a term)
intoGenGUSBP3
Cancer3DGUSBP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGUSBP3
MedgenGUSBP3
Genetic Testing Registry GUSBP3
NextProtQ15486 [Medical]
TSGene653188
GENETestsGUSBP3
Target ValidationGUSBP3
Huge Navigator GUSBP3 [HugePedia]
snp3D : Map Gene to Disease653188
BioCentury BCIQGUSBP3
ClinGenGUSBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653188
Clinical trialGUSBP3
Miscellaneous
canSAR (ICR)GUSBP3 (select the gene name)
DataMed IndexGUSBP3
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGUSBP3
EVEXGUSBP3
GoPubMedGUSBP3
iHOPGUSBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:30:37 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.