Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HAR1B (highly accelerated region 1B)

Identity

Alias_nameshighly accelerated region 1B (non-protein-coding RNA)
Alias_symbol (synonym)HAR1R
NCRNA00065
LINC00065
Other alias
HGNC (Hugo) HAR1B
LocusID (NCBI) 768097
Atlas_Id 64170
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63095493 and ends at 63102319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HAR1B   33118
Cards
Entrez_Gene (NCBI)HAR1B  768097  highly accelerated region 1B
AliasesHAR1R; LINC00065; NCRNA00065
GeneCards (Weizmann)HAR1B
Ensembl hg19 (Hinxton)ENSG00000231133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231133 [Gene_View]  ENSG00000231133 [Sequence]  chr20:63095493-63102319 [Contig_View]  HAR1B [Vega]
ICGC DataPortalENSG00000231133
TCGA cBioPortalHAR1B
AceView (NCBI)HAR1B
Genatlas (Paris)HAR1B
WikiGenes768097
SOURCE (Princeton)HAR1B
Genetics Home Reference (NIH)HAR1B
Genomic and cartography
GoldenPath hg38 (UCSC)HAR1B  -     chr20:63095493-63102319 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAR1B  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathHAR1B - 20q13.33 [CytoView hg19]  HAR1B - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000231133
Mapping of homologs : NCBIHAR1B [Mapview hg19]  HAR1B [Mapview hg38]
OMIM610557   
Gene and transcription
Genbank (Entrez)DQ860410 DQ860411 HG975397
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAR1B
Cluster EST : UnigeneHs.635159 [ NCBI ]
CGAP (NCI)Hs.635159
Alternative Splicing GalleryENSG00000231133
Gene ExpressionHAR1B [ NCBI-GEO ]   HAR1B [ EBI - ARRAY_EXPRESS ]   HAR1B [ SEEK ]   HAR1B [ MEM ]
Gene Expression Viewer (FireBrowse)HAR1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)768097
GTEX Portal (Tissue expression)HAR1B
Human Protein AtlasENSG00000231133-HAR1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HAR1B
DMDM Disease mutations768097
Blocks (Seattle)HAR1B
Human Protein Atlas [tissue]ENSG00000231133-HAR1B [tissue]
Protein Interaction databases
FunCoupENSG00000231133
BioGRIDHAR1B
STRING (EMBL)HAR1B
ZODIACHAR1B
Ontologies - Pathways
Huge Navigator HAR1B [HugePedia]
snp3D : Map Gene to Disease768097
BioCentury BCIQHAR1B
ClinGenHAR1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD768097
Chemical/Pharm GKB GenePA162390576
Clinical trialHAR1B
Miscellaneous
canSAR (ICR)HAR1B (select the gene name)
DataMed IndexHAR1B
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAR1B
EVEXHAR1B
GoPubMedHAR1B
iHOPHAR1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:30:46 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.