HCG22 (HLA complex group 22 (gene/pseudogene))

2014-11-01  

Identity

HGNC
HCG22
LOCATION
6p21.33
LOCUSID
285834
ALIAS
PBMUCL2

Other Information

Locus ID:

NCBI: 285834
MIM: 613918
HGNC: 27780
Ensembl: ENSG00000228789

Variants:

dbSNP: 285834
ClinVar: 285834
TCGA: ENSG00000228789
COSMIC: HCG22

RNA/Proteins

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA445532Retinal DiseasesDiseaseClinicalAnnotationassociatedPD
PA451749triamcinoloneChemicalClinicalAnnotationassociatedPD

References

Pubmed IDYearTitleCitations
198514452009High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.51
280052672017Human gingiva transcriptome during wound healing.6
209814472011Molecular cloning of two novel mucin-like genes in the disease-susceptibility locus for diffuse panbronchiolitis.0

Citation

Dessen P

HCG22 (HLA complex group 22 (gene/pseudogene))

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/64200/hcg22