HDAC4 (histone deacetylase 4)

2003-02-01  

Identity

HGNC
HDAC4
LOCATION
2q37.3
LOCUSID
9759
ALIAS
AHO3,BDMR,HA6116,HD4,HDAC-4,HDAC-A,HDACA
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 9759
MIM: 605314
HGNC: 14063
Ensembl: ENSG00000068024

Variants:

dbSNP: 9759
ClinVar: 9759
TCGA: ENSG00000068024
COSMIC: HDAC4

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000068024ENST00000345617P56524
ENSG00000068024ENST00000430200H7C397
ENSG00000068024ENST00000445704H7BZT3
ENSG00000068024ENST00000446876C9J0X4
ENSG00000068024ENST00000454542C9J481
ENSG00000068024ENST00000543185P56524
ENSG00000068024ENST00000544989F5H0B1

Expression (GTEx)

0
10
20
30
40
50
60
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Epstein-Barr virus infectionKEGGhsa05169
AlcoholismKEGGhsa05034
Epstein-Barr virus infectionKEGGko05169
AlcoholismKEGGko05034
Viral carcinogenesisKEGGhsa05203
Viral carcinogenesisKEGGko05203
MicroRNAs in cancerKEGGhsa05206
MicroRNAs in cancerKEGGko05206
DiseaseREACTOMER-HSA-1643685
Diseases of signal transductionREACTOMER-HSA-5663202
Signaling by NOTCH1 in CancerREACTOMER-HSA-2644603
Signaling by NOTCH1 PEST Domain Mutants in CancerREACTOMER-HSA-2644602
Constitutive Signaling by NOTCH1 PEST Domain MutantsREACTOMER-HSA-2644606
Signaling by NOTCH1 HD+PEST Domain Mutants in CancerREACTOMER-HSA-2894858
Constitutive Signaling by NOTCH1 HD+PEST Domain MutantsREACTOMER-HSA-2894862
Signal TransductionREACTOMER-HSA-162582
Signaling by NOTCHREACTOMER-HSA-157118
Signaling by NOTCH1REACTOMER-HSA-1980143
NOTCH1 Intracellular Domain Regulates TranscriptionREACTOMER-HSA-2122947
Apelin signaling pathwayKEGGhsa04371

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA451609temozolomideChemicalMultilinkAnnotationassociated24444404

References

Pubmed IDYearTitleCitations
167672192006CaM kinase II selectively signals to histone deacetylase 4 during cardiomyocyte hypertrophy.192
120320812002The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase.107
161666282005Regulation of MEF2 by histone deacetylase 4- and SIRT1 deacetylase-mediated lysine modifications.107
122423052002Association of class II histone deacetylases with heterochromatin protein 1: potential role for histone methylation in control of muscle differentiation.94
186145282008Structural and functional analysis of the human HDAC4 catalytic domain reveals a regulatory structural zinc-binding domain.93
206914072010Haploinsufficiency of HDAC4 causes brachydactyly mental retardation syndrome, with brachydactyly type E, developmental delays, and behavioral problems.90
197006472009Abrogation of TGF-beta1-induced fibroblast-myofibroblast differentiation by histone deacetylase inhibition.89
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85
186329852008HDAC4 promotes growth of colon cancer cells via repression of p21.80
151947492004Functional interaction between class II histone deacetylases and ICP0 of herpes simplex virus type 1.65

Citation

Dessen P

HDAC4 (histone deacetylase 4)

Atlas Genet Cytogenet Oncol Haematol. 2003-02-01

Online version: http://atlasgeneticsoncology.org/gene/40805/hdac4