HLA-DPB1 (major histocompatibility complex, class II, DP beta 1)

2008-03-01  

Identity

HGNC
LOCATION
6p21.32
LOCUSID
ALIAS
DPB1,HLA-DP,HLA-DP1B,HLA-DPB
FUSION GENES

Other Information

Locus ID:

NCBI: 3115
MIM: 142858
HGNC: 4940
Ensembl: ENSG00000223865

Variants:

dbSNP: 3115
ClinVar: 3115
TCGA: ENSG00000223865
COSMIC: HLA-DPB1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000223865ENST00000416804H0Y5P2
ENSG00000223865ENST00000418931P04440
ENSG00000223865ENST00000418931I4EC15
ENSG00000223865ENST00000428835H0Y7G7

Expression (GTEx)

0
50
100
150
200
250
300

Pathways

PathwaySourceExternal ID
Cell adhesion molecules (CAMs)KEGGko04514
Antigen processing and presentationKEGGko04612
Hematopoietic cell lineageKEGGko04640
Type I diabetes mellitusKEGGko04940
AsthmaKEGGko05310
Autoimmune thyroid diseaseKEGGko05320
Systemic lupus erythematosusKEGGko05322
Allograft rejectionKEGGko05330
Graft-versus-host diseaseKEGGko05332
Cell adhesion molecules (CAMs)KEGGhsa04514
Antigen processing and presentationKEGGhsa04612
Hematopoietic cell lineageKEGGhsa04640
Type I diabetes mellitusKEGGhsa04940
AsthmaKEGGhsa05310
Autoimmune thyroid diseaseKEGGhsa05320
Systemic lupus erythematosusKEGGhsa05322
Allograft rejectionKEGGhsa05330
Graft-versus-host diseaseKEGGhsa05332
Viral myocarditisKEGGhsa05416
Intestinal immune network for IgA productionKEGGko04672
Intestinal immune network for IgA productionKEGGhsa04672
LeishmaniasisKEGGko05140
LeishmaniasisKEGGhsa05140
PhagosomeKEGGko04145
PhagosomeKEGGhsa04145
ToxoplasmosisKEGGko05145
ToxoplasmosisKEGGhsa05145
Staphylococcus aureus infectionKEGGko05150
Staphylococcus aureus infectionKEGGhsa05150
Rheumatoid arthritisKEGGko05323
Rheumatoid arthritisKEGGhsa05323
TuberculosisKEGGko05152
TuberculosisKEGGhsa05152
Influenza AKEGGko05164
Influenza AKEGGhsa05164
HTLV-I infectionKEGGko05166
HTLV-I infectionKEGGhsa05166
Herpes simplex infectionKEGGko05168
Herpes simplex infectionKEGGhsa05168
Epstein-Barr virus infectionKEGGhsa05169
Epstein-Barr virus infectionKEGGko05169
Inflammatory bowel disease (IBD)KEGGhsa05321
Inflammatory bowel disease (IBD)KEGGko05321
Immune SystemREACTOMER-HSA-168256
Adaptive Immune SystemREACTOMER-HSA-1280218
TCR signalingREACTOMER-HSA-202403
Phosphorylation of CD3 and TCR zeta chainsREACTOMER-HSA-202427
Translocation of ZAP-70 to Immunological synapseREACTOMER-HSA-202430
Generation of second messenger moleculesREACTOMER-HSA-202433
Downstream TCR signalingREACTOMER-HSA-202424
Costimulation by the CD28 familyREACTOMER-HSA-388841
PD-1 signalingREACTOMER-HSA-389948
MHC class II antigen presentationREACTOMER-HSA-2132295
Cytokine Signaling in Immune systemREACTOMER-HSA-1280215
Interferon SignalingREACTOMER-HSA-913531
Interferon gamma signalingREACTOMER-HSA-877300
Th1 and Th2 cell differentiationKEGGko04658
Th1 and Th2 cell differentiationKEGGhsa04658
Th17 cell differentiationKEGGko04659
Th17 cell differentiationKEGGhsa04659

Protein levels (Protein atlas)

Not detected
Low
Medium
High

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA131285571aspirin-induced asthmaDiseaseClinicalAnnotation, VariantAnnotationassociatedPD15007363, 9179433
PA443297AgranulocytosisDiseaseVariantAnnotationassociatedPD11266078
PA443450AsthmaDiseaseClinicalAnnotation, VariantAnnotationassociatedPD15007363, 19392989, 9179433
PA445999UrticariaDiseaseVariantAnnotationassociatedPD15784113
PA447216SchizophreniaDiseaseVariantAnnotationassociatedPD11266078
PA448497aspirinChemicalClinicalAnnotation, VariantAnnotationassociatedPD15007363, 15784113, 19392989, 9179433
PA449061clozapineChemicalVariantAnnotationassociatedPD11266078

References

Pubmed IDYearTitleCitations
379806312024The effect of HLA-DP gene polymorphisms in Plasmodium Vivax-induced malaria susceptibility.0
380402712024HLA sequencing identifies novel associations and suggests clinical relevance of DPB1*04:01 in ANCA-associated Granulomatosis with polyangiitis.0
379806312024The effect of HLA-DP gene polymorphisms in Plasmodium Vivax-induced malaria susceptibility.0
380402712024HLA sequencing identifies novel associations and suggests clinical relevance of DPB1*04:01 in ANCA-associated Granulomatosis with polyangiitis.0
360745402023The novel HLA-DPB1 allele, HLA-DPB1*1344:01, first identified in Korean individuals by next-generation sequencing.0
363941662023Characterization of the novel HLA-DPB1*1348:01 allele by sequencing-based typing.1
364115072023Characterization of the novel HLA-DPB1*11:01:06 allele by sequencing-based typing.1
360745402023The novel HLA-DPB1 allele, HLA-DPB1*1344:01, first identified in Korean individuals by next-generation sequencing.0
363941662023Characterization of the novel HLA-DPB1*1348:01 allele by sequencing-based typing.1
364115072023Characterization of the novel HLA-DPB1*11:01:06 allele by sequencing-based typing.1
339292772022Influence of HLA Class II Alleles and DRB1-DQB1 Haplotypes on Rheumatoid Arthritis Susceptibility and Autoantibody Status in the Chinese Han Population.2
350786902022Association of HLA-DPB1, NLRP10, OVOL1, and ABCC11 with the axillary microbiome in a Japanese population.0
358314112022Integrated transcriptomic and regulatory network analyses uncovers the role of let-7b-5p, SPIB, and HLA-DPB1 in sepsis.3
339292772022Influence of HLA Class II Alleles and DRB1-DQB1 Haplotypes on Rheumatoid Arthritis Susceptibility and Autoantibody Status in the Chinese Han Population.2
350786902022Association of HLA-DPB1, NLRP10, OVOL1, and ABCC11 with the axillary microbiome in a Japanese population.0

Citation

Dessen P

HLA-DPB1 (major histocompatibility complex, class II, DP beta 1)

Atlas Genet Cytogenet Oncol Haematol. 2008-03-01

Online version: http://atlasgeneticsoncology.org/gene/50065/hla-dpb1