Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HOXB-AS3 (HOXB cluster antisense RNA 3)

Identity

Alias_namesHOXB cluster antisense RNA 3 (non-protein coding)
Other alias-
HGNC (Hugo) HOXB-AS3
LocusID (NCBI) 404266
Atlas_Id 57236
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48590420 and ends at 48602341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXB-AS3   40283
Cards
Entrez_Gene (NCBI)HOXB-AS3  404266  HOXB cluster antisense RNA 3
Aliases
GeneCards (Weizmann)HOXB-AS3
Ensembl hg19 (Hinxton)ENSG00000233101 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233101 [Gene_View]  ENSG00000233101 [Sequence]  chr17:48590420-48602341 [Contig_View]  HOXB-AS3 [Vega]
ICGC DataPortalENSG00000233101
TCGA cBioPortalHOXB-AS3
AceView (NCBI)HOXB-AS3
Genatlas (Paris)HOXB-AS3
WikiGenes404266
SOURCE (Princeton)HOXB-AS3
Genetics Home Reference (NIH)HOXB-AS3
Genomic and cartography
GoldenPath hg38 (UCSC)HOXB-AS3  -     chr17:48590420-48602341 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXB-AS3  -     17q21.32   [Description]    (hg19-Feb_2009)
GoldenPathHOXB-AS3 - 17q21.32 [CytoView hg19]  HOXB-AS3 - 17q21.32 [CytoView hg38]
ImmunoBaseENSG00000233101
Mapping of homologs : NCBIHOXB-AS3 [Mapview hg19]  HOXB-AS3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA299267 BC010732 BF431268 BG196429 BG203124
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXB-AS3
Cluster EST : UnigeneHs.660088 [ NCBI ]
CGAP (NCI)Hs.660088
Alternative Splicing GalleryENSG00000233101
Gene ExpressionHOXB-AS3 [ NCBI-GEO ]   HOXB-AS3 [ EBI - ARRAY_EXPRESS ]   HOXB-AS3 [ SEEK ]   HOXB-AS3 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXB-AS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)404266
GTEX Portal (Tissue expression)HOXB-AS3
Human Protein AtlasENSG00000233101-HOXB-AS3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOXB-AS3
DMDM Disease mutations404266
Blocks (Seattle)HOXB-AS3
Human Protein Atlas [tissue]ENSG00000233101-HOXB-AS3 [tissue]
IPIIPI00386651   
Protein Interaction databases
FunCoupENSG00000233101
BioGRIDHOXB-AS3
STRING (EMBL)HOXB-AS3
ZODIACHOXB-AS3
Ontologies - Pathways
Huge Navigator HOXB-AS3 [HugePedia]
snp3D : Map Gene to Disease404266
BioCentury BCIQHOXB-AS3
ClinGenHOXB-AS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404266
Clinical trialHOXB-AS3
Miscellaneous
canSAR (ICR)HOXB-AS3 (select the gene name)
DataMed IndexHOXB-AS3
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXB-AS3
EVEXHOXB-AS3
GoPubMedHOXB-AS3
iHOPHOXB-AS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:47:10 CET 2019
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