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HSD11B1L (hydroxysteroid (11-beta) dehydrogenase 1-like)

Identity

Other names11-DH3
11-beta-HSD3
HSD3
SCDR10
SCDR10B
SDR26C2
HGNC (Hugo) HSD11B1L
LocusID (NCBI) 374875
Location 19p13.3
Location_base_pair Starts at 5680776 and ends at 5688534 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)HSD11B1L   30419
Cards
Entrez_Gene (NCBI)HSD11B1L  374875  hydroxysteroid (11-beta) dehydrogenase 1-like
GeneCards (Weizmann)HSD11B1L
Ensembl (Hinxton)ENSG00000167733 [Gene_View]  chr19:5680776-5688534 [Contig_View]  HSD11B1L [Vega]
ICGC DataPortalENSG00000167733
AceView (NCBI)HSD11B1L
Genatlas (Paris)HSD11B1L
WikiGenes374875
SOURCE (Princeton)NM_001267868 NM_001267869 NM_001267870 NM_001267871 NM_198533 NM_198704 NM_198705 NM_198706 NM_198707 NM_198708
Genomic and cartography
GoldenPath (UCSC)HSD11B1L  -  19p13.3   chr19:5680776-5688534 +  19p13.3   [Description]    (hg19-Feb_2009)
EnsemblHSD11B1L - 19p13.3 [CytoView]
Mapping of homologs : NCBIHSD11B1L [Mapview]
Gene and transcription
Genbank (Entrez)AI871311 AK308206 AY268351 AY268352 AY268353
RefSeq transcript (Entrez)NM_001267868 NM_001267869 NM_001267870 NM_001267871 NM_198533 NM_198704 NM_198705 NM_198706 NM_198707 NM_198708
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838477 NW_004929412
Consensus coding sequences : CCDS (NCBI)HSD11B1L
Cluster EST : UnigeneHs.739286 [ NCBI ]
CGAP (NCI)Hs.739286
Alternative Splicing : Fast-db (Paris)GSHG0014496
Alternative Splicing GalleryENSG00000167733
Gene ExpressionHSD11B1L [ NCBI-GEO ]     HSD11B1L [ SEEK ]   HSD11B1L [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5J1 (Uniprot)
NextProtQ7Z5J1  [Medical]
With graphics : InterProQ7Z5J1
Splice isoforms : SwissVarQ7Z5J1 (Swissvar)
Catalytic activity : Enzyme1.1.1.- [ Enzyme-Expasy ]   1.1.1.-1.1.1.- [ IntEnz-EBI ]   1.1.1.- [ BRENDA ]   1.1.1.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ADH_SHORT (PS00061)   
Domains : Interpro (EBI)DH_sc/Rdtase_SDR    Glc/ribitol_DH    NAD(P)-bd_dom    Sc_DH/Rdtase_CS   
Related proteins : CluSTrQ7Z5J1
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
DMDM Disease mutations374875
Blocks (Seattle)Q7Z5J1
Human Protein AtlasENSG00000167733
Peptide AtlasQ7Z5J1
HPRD18022
IPIIPI00385275   IPI00884951   IPI00876871   IPI00789914   IPI00385295   IPI00394885   IPI00885060   IPI00748063   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5J1
IntAct (EBI)Q7Z5J1
FunCoupENSG00000167733
BioGRIDHSD11B1L
IntegromeDBHSD11B1L
STRING (EMBL)HSD11B1L
Ontologies - Pathways
QuickGOQ7Z5J1
Ontology : AmiGOextracellular region  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIextracellular region  oxidoreductase activity  oxidation-reduction process  
Protein Interaction DatabaseHSD11B1L
Wikipedia pathwaysHSD11B1L
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HSD11B1L
SNP (GeneSNP Utah)HSD11B1L
SNP : HGBaseHSD11B1L
Genetic variants : HAPMAPHSD11B1L
1000_GenomesHSD11B1L 
ICGC programENSG00000167733 
CONAN: Copy Number AnalysisHSD11B1L 
Somatic Mutations in Cancer : COSMICHSD11B1L 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)19:5680776-5688534
Mutations and Diseases : HGMDHSD11B1L
OMIM
MedgenHSD11B1L
GENETestsHSD11B1L
Disease Genetic AssociationHSD11B1L
Huge Navigator HSD11B1L [HugePedia]  HSD11B1L [HugeCancerGEM]
Genomic VariantsHSD11B1L  HSD11B1L [DGVbeta]
Exome VariantHSD11B1L
dbVarHSD11B1L
ClinVarHSD11B1L
snp3D : Map Gene to Disease374875
General knowledge
Homologs : HomoloGeneHSD11B1L
Homology/Alignments : Family Browser (UCSC)HSD11B1L
Phylogenetic Trees/Animal Genes : TreeFamHSD11B1L
Chemical/Protein Interactions : CTD374875
Chemical/Pharm GKB GenePA144596423
Clinical trialHSD11B1L
Cancer Resource (Charite)ENSG00000167733
Other databases
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
CoreMineHSD11B1L
GoPubMedHSD11B1L
iHOPHSD11B1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:32:34 CET 2014

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