IFNW1 (interferon omega 1)

2016-10-01  

Identity

HGNC
IFNW1
LOCATION
9p21.3
LOCUSID
3467
ALIAS
-

Other Information

Locus ID:

NCBI: 3467
MIM: 147553
HGNC: 5448
Ensembl: ENSG00000177047

Variants:

dbSNP: 3467
ClinVar: 3467
TCGA: ENSG00000177047
COSMIC: IFNW1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000177047ENST00000380229P05000

Expression (GTEx)

0
1
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Cytokine-cytokine receptor interactionKEGGko04060
Jak-STAT signaling pathwayKEGGko04630
Cytokine-cytokine receptor interactionKEGGhsa04060
Jak-STAT signaling pathwayKEGGhsa04630
RIG-I-like receptor signaling pathwayKEGGko04622
RIG-I-like receptor signaling pathwayKEGGhsa04622

References

Pubmed IDYearTitleCitations
218549862011Structural linkage between ligand discrimination and receptor activation by type I interferons.115
156217272004Human interferons alpha, beta and omega.55
203313782010Large-scale candidate gene analysis of spontaneous clearance of hepatitis C virus.29
221927112011Type I interferon pathway in adult and juvenile dermatomyositis.29
202374962010New genetic associations detected in a host response study to hepatitis B vaccine.27
205748432010Associations of 9p21 variants with cutaneous malignant melanoma, nevi, and pigmentation phenotypes in melanoma-prone families with and without CDKN2A mutations.18
205748432010Associations of 9p21 variants with cutaneous malignant melanoma, nevi, and pigmentation phenotypes in melanoma-prone families with and without CDKN2A mutations.18
206770142010An approach based on a genome-wide association study reveals candidate loci for narcolepsy.16
205883082010Dengue hemorrhagic fever is associated with polymorphisms in JAK1.9
289576932017Interferon-omega: Current status in clinical applications.5

Citation

Dessen P

IFNW1 (interferon omega 1)

Atlas Genet Cytogenet Oncol Haematol. 2016-10-01

Online version: http://atlasgeneticsoncology.org/gene/56139/ifnw1