Atlas of Genetics and Cytogenetics in Oncology and Haematology

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IGDCC3 (immunoglobulin superfamily DCC subclass member 3)

Identity

Alias (NCBI)HsT18880
PUNC
HGNC (Hugo) IGDCC3
HGNC Alias symbHsT18880
HGNC Previous namePUNC
HGNC Previous nameputative neuronal cell adhesion molecule
LocusID (NCBI) 9543
Atlas_Id 64542
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65327127 and ends at 65378040 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGDCC3 (15q22.31) / GLDN (15q21.2)IGDCC3 (15q22.31) / KIF3B (20q11.21)IGDCC3 (15q22.31) / TNRC18 (7p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(15;15)(q21;q22) IGDCC3/GLDN

External links

Nomenclature
HGNC (Hugo)IGDCC3   9700
Cards
Entrez_Gene (NCBI)IGDCC3    immunoglobulin superfamily DCC subclass member 3
AliasesHsT18880; PUNC
GeneCards (Weizmann)IGDCC3
Ensembl hg19 (Hinxton)ENSG00000174498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174498 [Gene_View]  ENSG00000174498 [Sequence]  chr15:65327127-65378040 [Contig_View]  IGDCC3 [Vega]
ICGC DataPortalENSG00000174498
TCGA cBioPortalIGDCC3
AceView (NCBI)IGDCC3
Genatlas (Paris)IGDCC3
SOURCE (Princeton)IGDCC3
Genetics Home Reference (NIH)IGDCC3
Genomic and cartography
GoldenPath hg38 (UCSC)IGDCC3  -     chr15:65327127-65378040 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGDCC3  -     15q22.31   [Description]    (hg19-Feb_2009)
GoldenPathIGDCC3 - 15q22.31 [CytoView hg19]  IGDCC3 - 15q22.31 [CytoView hg38]
ImmunoBaseENSG00000174498
genome Data Viewer NCBIIGDCC3 [Mapview hg19]  
OMIM604184   
Gene and transcription
Genbank (Entrez)AF063936 AI740721 AK095529 BC042054 BC067107
RefSeq transcript (Entrez)NM_004884
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGDCC3
Alternative Splicing GalleryENSG00000174498
Gene ExpressionIGDCC3 [ NCBI-GEO ]   IGDCC3 [ EBI - ARRAY_EXPRESS ]   IGDCC3 [ SEEK ]   IGDCC3 [ MEM ]
Gene Expression Viewer (FireBrowse)IGDCC3 [ Firebrowse - Broad ]
GenevisibleExpression of IGDCC3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9543
GTEX Portal (Tissue expression)IGDCC3
Human Protein AtlasENSG00000174498-IGDCC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVU1
Splice isoforms : SwissVarQ8IVU1
PhosPhoSitePlusQ8IVU1
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGDCC3
Blocks (Seattle)IGDCC3
SuperfamilyQ8IVU1
Human Protein Atlas [tissue]ENSG00000174498-IGDCC3 [tissue]
Peptide AtlasQ8IVU1
HPRD09169
IPIIPI00292980   IPI00902779   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVU1
IntAct (EBI)Q8IVU1
BioGRIDIGDCC3
STRING (EMBL)IGDCC3
ZODIACIGDCC3
Ontologies - Pathways
QuickGOQ8IVU1
Ontology : AmiGOintegral component of plasma membrane  neuromuscular process controlling balance  
Ontology : EGO-EBIintegral component of plasma membrane  neuromuscular process controlling balance  
NDEx NetworkIGDCC3
Atlas of Cancer Signalling NetworkIGDCC3
Wikipedia pathwaysIGDCC3
Orthology - Evolution
OrthoDB9543
GeneTree (enSembl)ENSG00000174498
Phylogenetic Trees/Animal Genes : TreeFamIGDCC3
HOGENOMQ8IVU1
Homologs : HomoloGeneIGDCC3
Homology/Alignments : Family Browser (UCSC)IGDCC3
Gene fusions - Rearrangements
Fusion : QuiverIGDCC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGDCC3 [hg38]
dbVarIGDCC3
ClinVarIGDCC3
MonarchIGDCC3
1000_GenomesIGDCC3 
Exome Variant ServerIGDCC3
GNOMAD BrowserENSG00000174498
Varsome BrowserIGDCC3
Genomic Variants (DGV)IGDCC3 [DGVbeta]
DECIPHERIGDCC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGDCC3 
Mutations
ICGC Data PortalIGDCC3 
TCGA Data PortalIGDCC3 
Broad Tumor PortalIGDCC3
OASIS PortalIGDCC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGDCC3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIGDCC3
Mutations and Diseases : HGMDIGDCC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGDCC3
DgiDB (Drug Gene Interaction Database)IGDCC3
DoCM (Curated mutations)IGDCC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGDCC3 (select a term)
intoGenIGDCC3
Cancer3DIGDCC3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604184   
Orphanet
DisGeNETIGDCC3
MedgenIGDCC3
Genetic Testing Registry IGDCC3
NextProtQ8IVU1 [Medical]
GENETestsIGDCC3
Target ValidationIGDCC3
Huge Navigator IGDCC3 [HugePedia]
ClinGenIGDCC3
Clinical trials, drugs, therapy
MyCancerGenomeIGDCC3
Protein Interactions : CTD
Pharm GKB GenePA164720881
Clinical trialIGDCC3
Miscellaneous
canSAR (ICR)IGDCC3 (select the gene name)
HarmonizomeIGDCC3
DataMed IndexIGDCC3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGDCC3
EVEXIGDCC3
GoPubMedIGDCC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:57:35 CET 2020
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