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IGSF9B (immunoglobulin superfamily member 9B)

Identity

Alias (NCBI)LINC00947
MIR4697HG
HGNC (Hugo) IGSF9B
HGNC Alias symbLINC00947
LOC283174
HGNC Alias namelong intergenic non-protein coding RNA 947
HGNC Previous nameMIR4697 host gene (non-protein coding)
LocusID (NCBI) 283174
Atlas_Id 56749
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 133896441 and ends at 133956968 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGSF9B (11q25) / ARHGEF10L (1p36.13)SNAP25 (20p12.2) / IGSF9B (11q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)IGSF9B   32326
Cards
Entrez_Gene (NCBI)IGSF9B    immunoglobulin superfamily member 9B
AliasesLINC00947; MIR4697HG
GeneCards (Weizmann)IGSF9B
Ensembl hg19 (Hinxton)ENSG00000280237 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280237 [Gene_View]  ENSG00000280237 [Sequence]  chr11:133896441-133956968 [Contig_View]  IGSF9B [Vega]
ICGC DataPortalENSG00000280237
TCGA cBioPortalIGSF9B
AceView (NCBI)IGSF9B
Genatlas (Paris)IGSF9B
SOURCE (Princeton)IGSF9B
Genetics Home Reference (NIH)IGSF9B
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF9B  -     chr11:133896441-133956968 -  11q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF9B  -     11q25   [Description]    (hg19-Feb_2009)
GoldenPathIGSF9B - 11q25 [CytoView hg19]  IGSF9B - 11q25 [CytoView hg38]
ImmunoBaseENSG00000280237
genome Data Viewer NCBIIGSF9B [Mapview hg19]  
OMIM613773   
Gene and transcription
Genbank (Entrez)AB028953 AB231704 AI208637 AK097578 AK123849
RefSeq transcript (Entrez)NM_001001873 NM_001277285 NM_014987
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF9B
Alternative Splicing GalleryENSG00000280237
Gene ExpressionIGSF9B [ NCBI-GEO ]   IGSF9B [ EBI - ARRAY_EXPRESS ]   IGSF9B [ SEEK ]   IGSF9B [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF9B [ Firebrowse - Broad ]
GenevisibleExpression of IGSF9B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283174
GTEX Portal (Tissue expression)IGSF9B
Human Protein AtlasENSG00000280237-IGSF9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPX0
Splice isoforms : SwissVarQ9UPX0
PhosPhoSitePlusQ9UPX0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)IGSF9B
Blocks (Seattle)IGSF9B
SuperfamilyQ9UPX0
Human Protein Atlas [tissue]ENSG00000280237-IGSF9B [tissue]
Peptide AtlasQ9UPX0
IPIIPI00847471   IPI00432700   IPI00983208   IPI00784613   IPI00977894   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPX0
IntAct (EBI)Q9UPX0
BioGRIDIGSF9B
STRING (EMBL)IGSF9B
ZODIACIGSF9B
Ontologies - Pathways
QuickGOQ9UPX0
Ontology : AmiGOcell adhesion  nervous system development  postsynaptic density  integral component of membrane  neuron projection  postsynaptic membrane  GABA-ergic synapse  postsynaptic specialization of symmetric synapse  
Ontology : EGO-EBIcell adhesion  nervous system development  postsynaptic density  integral component of membrane  neuron projection  postsynaptic membrane  GABA-ergic synapse  postsynaptic specialization of symmetric synapse  
NDEx NetworkIGSF9B
Atlas of Cancer Signalling NetworkIGSF9B
Wikipedia pathwaysIGSF9B
Orthology - Evolution
OrthoDB283174
GeneTree (enSembl)ENSG00000280237
Phylogenetic Trees/Animal Genes : TreeFamIGSF9B
HOGENOMQ9UPX0
Homologs : HomoloGeneIGSF9B
Homology/Alignments : Family Browser (UCSC)IGSF9B
Gene fusions - Rearrangements
Fusion : QuiverIGSF9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF9B [hg38]
dbVarIGSF9B
ClinVarIGSF9B
MonarchIGSF9B
1000_GenomesIGSF9B 
Exome Variant ServerIGSF9B
GNOMAD BrowserENSG00000280237
Varsome BrowserIGSF9B
Genomic Variants (DGV)IGSF9B [DGVbeta]
DECIPHERIGSF9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF9B 
Mutations
ICGC Data PortalIGSF9B 
TCGA Data PortalIGSF9B 
Broad Tumor PortalIGSF9B
OASIS PortalIGSF9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIGSF9B
Mutations and Diseases : HGMDIGSF9B
BioMutasearch IGSF9B
DgiDB (Drug Gene Interaction Database)IGSF9B
DoCM (Curated mutations)IGSF9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF9B (select a term)
intoGenIGSF9B
Cancer3DIGSF9B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613773   
Orphanet
DisGeNETIGSF9B
MedgenIGSF9B
Genetic Testing Registry IGSF9B
NextProtQ9UPX0 [Medical]
GENETestsIGSF9B
Target ValidationIGSF9B
Huge Navigator IGSF9B [HugePedia]
ClinGenIGSF9B
Clinical trials, drugs, therapy
MyCancerGenomeIGSF9B
Protein Interactions : CTD
Pharm GKB GenePA142671660
PharosQ9UPX0
Clinical trialIGSF9B
Miscellaneous
canSAR (ICR)IGSF9B (select the gene name)
HarmonizomeIGSF9B
DataMed IndexIGSF9B
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIGSF9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:26:24 CET 2021

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