Atlas of Genetics and Cytogenetics in Oncology and Haematology

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IL17C (interleukin 17C)

Identity

Alias_symbol (synonym)IL-17C
CX2
IL-21
MGC126884
MGC138401
Other alias
HGNC (Hugo) IL17C
LocusID (NCBI) 27189
Atlas_Id 40946
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 88638593 and ends at 88640474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)IL17C   5983
Cards
Entrez_Gene (NCBI)IL17C  27189  interleukin 17C
AliasesCX2; IL-17C
GeneCards (Weizmann)IL17C
Ensembl hg19 (Hinxton)ENSG00000124391 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124391 [Gene_View]  ENSG00000124391 [Sequence]  chr16:88638593-88640474 [Contig_View]  IL17C [Vega]
ICGC DataPortalENSG00000124391
TCGA cBioPortalIL17C
AceView (NCBI)IL17C
Genatlas (Paris)IL17C
WikiGenes27189
SOURCE (Princeton)IL17C
Genetics Home Reference (NIH)IL17C
Genomic and cartography
GoldenPath hg38 (UCSC)IL17C  -     chr16:88638593-88640474 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL17C  -     16q24.2   [Description]    (hg19-Feb_2009)
GoldenPathIL17C - 16q24.2 [CytoView hg19]  IL17C - 16q24.2 [CytoView hg38]
ImmunoBaseENSG00000124391
Mapping of homologs : NCBIIL17C [Mapview hg19]  IL17C [Mapview hg38]
OMIM604628   
Gene and transcription
Genbank (Entrez)AF152099 AY358471 BC069152 BC069410 BC101835
RefSeq transcript (Entrez)NM_013278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL17C
Cluster EST : UnigeneHs.278911 [ NCBI ]
CGAP (NCI)Hs.278911
Alternative Splicing GalleryENSG00000124391
Gene ExpressionIL17C [ NCBI-GEO ]   IL17C [ EBI - ARRAY_EXPRESS ]   IL17C [ SEEK ]   IL17C [ MEM ]
Gene Expression Viewer (FireBrowse)IL17C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27189
GTEX Portal (Tissue expression)IL17C
Human Protein AtlasENSG00000124391-IL17C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0M4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0M4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0M4
Splice isoforms : SwissVarQ9P0M4
PhosPhoSitePlusQ9P0M4
Domains : Interpro (EBI)Cystine-knot_cytokine    IL-17_chr    IL-17_fam   
Domain families : Pfam (Sanger)IL17 (PF06083)   
Domain families : Pfam (NCBI)pfam06083   
Conserved Domain (NCBI)IL17C
DMDM Disease mutations27189
Blocks (Seattle)IL17C
SuperfamilyQ9P0M4
Human Protein Atlas [tissue]ENSG00000124391-IL17C [tissue]
Peptide AtlasQ9P0M4
HPRD06863
IPIIPI00002316   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0M4
IntAct (EBI)Q9P0M4
FunCoupENSG00000124391
BioGRIDIL17C
STRING (EMBL)IL17C
ZODIACIL17C
Ontologies - Pathways
QuickGOQ9P0M4
Ontology : AmiGOcytokine activity  extracellular region  extracellular space  inflammatory response  cell surface receptor signaling pathway  cell-cell signaling  interleukin-17-mediated signaling pathway  
Ontology : EGO-EBIcytokine activity  extracellular region  extracellular space  inflammatory response  cell surface receptor signaling pathway  cell-cell signaling  interleukin-17-mediated signaling pathway  
NDEx NetworkIL17C
Atlas of Cancer Signalling NetworkIL17C
Wikipedia pathwaysIL17C
Orthology - Evolution
OrthoDB27189
GeneTree (enSembl)ENSG00000124391
Phylogenetic Trees/Animal Genes : TreeFamIL17C
HOGENOMQ9P0M4
Homologs : HomoloGeneIL17C
Homology/Alignments : Family Browser (UCSC)IL17C
Gene fusions - Rearrangements
Fusion : QuiverIL17C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL17C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL17C
dbVarIL17C
ClinVarIL17C
1000_GenomesIL17C 
Exome Variant ServerIL17C
ExAC (Exome Aggregation Consortium)ENSG00000124391
GNOMAD BrowserENSG00000124391
Varsome BrowserIL17C
Genetic variants : HAPMAP27189
Genomic Variants (DGV)IL17C [DGVbeta]
DECIPHERIL17C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL17C 
Mutations
ICGC Data PortalIL17C 
TCGA Data PortalIL17C 
Broad Tumor PortalIL17C
OASIS PortalIL17C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL17C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIL17C
Mutations and Diseases : HGMDIL17C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL17C
DgiDB (Drug Gene Interaction Database)IL17C
DoCM (Curated mutations)IL17C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL17C (select a term)
intoGenIL17C
Cancer3DIL17C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604628   
Orphanet
DisGeNETIL17C
MedgenIL17C
Genetic Testing Registry IL17C
NextProtQ9P0M4 [Medical]
TSGene27189
GENETestsIL17C
Target ValidationIL17C
Huge Navigator IL17C [HugePedia]
snp3D : Map Gene to Disease27189
BioCentury BCIQIL17C
ClinGenIL17C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27189
Chemical/Pharm GKB GenePA29797
Clinical trialIL17C
Miscellaneous
canSAR (ICR)IL17C (select the gene name)
DataMed IndexIL17C
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL17C
EVEXIL17C
GoPubMedIL17C
iHOPIL17C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:48:13 CET 2019
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