Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KBTBD3 (kelch repeat and BTB domain containing 3)

Identity

Alias (NCBI)BKLHD3
HGNC (Hugo) KBTBD3
HGNC Previous nameBKLHD3
HGNC Previous nameBTB and kelch domain containing 3
 kelch repeat and BTB (POZ) domain containing 3
LocusID (NCBI) 143879
Atlas_Id 64752
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 106051098 and ends at 106077738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)KBTBD3   22934
Cards
Entrez_Gene (NCBI)KBTBD3    kelch repeat and BTB domain containing 3
AliasesBKLHD3
GeneCards (Weizmann)KBTBD3
Ensembl hg19 (Hinxton)ENSG00000182359 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182359 [Gene_View]  ENSG00000182359 [Sequence]  chr11:106051098-106077738 [Contig_View]  KBTBD3 [Vega]
ICGC DataPortalENSG00000182359
TCGA cBioPortalKBTBD3
AceView (NCBI)KBTBD3
Genatlas (Paris)KBTBD3
SOURCE (Princeton)KBTBD3
Genetics Home Reference (NIH)KBTBD3
Genomic and cartography
GoldenPath hg38 (UCSC)KBTBD3  -     chr11:106051098-106077738 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KBTBD3  -     11q22.3   [Description]    (hg19-Feb_2009)
GoldenPathKBTBD3 - 11q22.3 [CytoView hg19]  KBTBD3 - 11q22.3 [CytoView hg38]
ImmunoBaseENSG00000182359
genome Data Viewer NCBIKBTBD3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK055247 AK092993 AK124540 AK289915 BC047311
RefSeq transcript (Entrez)NM_001330359 NM_152433 NM_198439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KBTBD3
Alternative Splicing GalleryENSG00000182359
Gene ExpressionKBTBD3 [ NCBI-GEO ]   KBTBD3 [ EBI - ARRAY_EXPRESS ]   KBTBD3 [ SEEK ]   KBTBD3 [ MEM ]
Gene Expression Viewer (FireBrowse)KBTBD3 [ Firebrowse - Broad ]
GenevisibleExpression of KBTBD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143879
GTEX Portal (Tissue expression)KBTBD3
Human Protein AtlasENSG00000182359-KBTBD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAB2
Splice isoforms : SwissVarQ8NAB2
PhosPhoSitePlusQ8NAB2
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB-kelch_protein    BTB/POZ_dom    Kelch-typ_b-propeller    Kelch_1    SKP1/BTB/POZ_sf   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)KBTBD3
Blocks (Seattle)KBTBD3
SuperfamilyQ8NAB2
Human Protein Atlas [tissue]ENSG00000182359-KBTBD3 [tissue]
Peptide AtlasQ8NAB2
HPRD10005
IPIIPI00978206   IPI00167953   IPI00979598   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAB2
IntAct (EBI)Q8NAB2
BioGRIDKBTBD3
STRING (EMBL)KBTBD3
ZODIACKBTBD3
Ontologies - Pathways
QuickGOQ8NAB2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKBTBD3
Atlas of Cancer Signalling NetworkKBTBD3
Wikipedia pathwaysKBTBD3
Orthology - Evolution
OrthoDB143879
GeneTree (enSembl)ENSG00000182359
Phylogenetic Trees/Animal Genes : TreeFamKBTBD3
HOGENOMQ8NAB2
Homologs : HomoloGeneKBTBD3
Homology/Alignments : Family Browser (UCSC)KBTBD3
Gene fusions - Rearrangements
Fusion : QuiverKBTBD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKBTBD3 [hg38]
dbVarKBTBD3
ClinVarKBTBD3
MonarchKBTBD3
1000_GenomesKBTBD3 
Exome Variant ServerKBTBD3
GNOMAD BrowserENSG00000182359
Varsome BrowserKBTBD3
Genomic Variants (DGV)KBTBD3 [DGVbeta]
DECIPHERKBTBD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKBTBD3 
Mutations
ICGC Data PortalKBTBD3 
TCGA Data PortalKBTBD3 
Broad Tumor PortalKBTBD3
OASIS PortalKBTBD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKBTBD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKBTBD3
Mutations and Diseases : HGMDKBTBD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KBTBD3
DgiDB (Drug Gene Interaction Database)KBTBD3
DoCM (Curated mutations)KBTBD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KBTBD3 (select a term)
intoGenKBTBD3
Cancer3DKBTBD3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKBTBD3
MedgenKBTBD3
Genetic Testing Registry KBTBD3
NextProtQ8NAB2 [Medical]
GENETestsKBTBD3
Target ValidationKBTBD3
Huge Navigator KBTBD3 [HugePedia]
ClinGenKBTBD3
Clinical trials, drugs, therapy
MyCancerGenomeKBTBD3
Protein Interactions : CTD
Pharm GKB GenePA134920598
Clinical trialKBTBD3
Miscellaneous
canSAR (ICR)KBTBD3 (select the gene name)
HarmonizomeKBTBD3
DataMed IndexKBTBD3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKBTBD3
EVEXKBTBD3
GoPubMedKBTBD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:58:20 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.