Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNJ5 (potassium inwardly-rectifying channel, subfamily J, member 5)

Identity

Other namesCIR
GIRK4
KATP1
KIR3.4
LQT13
HGNC (Hugo) KCNJ5
LocusID (NCBI) 3762
Location 11q24.3
Location_base_pair Starts at 128761313 and ends at 128787951 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNJ5   6266
Cards
Entrez_Gene (NCBI)KCNJ5  3762  potassium inwardly-rectifying channel, subfamily J, member 5
GeneCards (Weizmann)KCNJ5
Ensembl (Hinxton) [Gene_View]  chr11:128761313-128787951 [Contig_View]  KCNJ5 [Vega]
cBioPortalKCNJ5
AceView (NCBI)KCNJ5
Genatlas (Paris)KCNJ5
WikiGenes3762
SOURCE (Princeton)NM_000890
Genomic and cartography
GoldenPath (UCSC)KCNJ5  -  11q24.3   chr11:128761313-128787951 +  11q24.3   [Description]    (hg19-Feb_2009)
EnsemblKCNJ5 - 11q24.3 [CytoView]
Mapping of homologs : NCBIKCNJ5 [Mapview]
OMIM600734   613485   613677   
Gene and transcription
Genbank (Entrez)AB690268 AK312837 BC069386 BC069482 BC069499
RefSeq transcript (Entrez)NM_000890
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_023406 NT_033899 NW_001838044 NW_004929381
Consensus coding sequences : CCDS (NCBI)KCNJ5
Cluster EST : UnigeneHs.632109 [ NCBI ]
CGAP (NCI)Hs.632109
Alternative Splicing : Fast-db (Paris)GSHG0005398
Gene ExpressionKCNJ5 [ NCBI-GEO ]     KCNJ5 [ SEEK ]   KCNJ5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48544 (Uniprot)
NextProtP48544  [Medical]
With graphics : InterProP48544
Splice isoforms : SwissVarP48544 (Swissvar)
Domains : Interpro (EBI)Ig_E-set [organisation]   K_chnl_inward-rec_Kir [organisation]   K_chnl_inward-rec_Kir3.4 [organisation]   K_chnl_inward-rec_Kir_cyto [organisation]  
Related proteins : CluSTrP48544
Domain families : Pfam (Sanger)IRK (PF01007)   
Domain families : Pfam (NCBI)pfam01007   
DMDM Disease mutations3762
Blocks (Seattle)P48544
Peptide AtlasP48544
HPRD09010
IPIIPI00298865   IPI00985408   IPI00981047   
Protein Interaction databases
DIP (DOE-UCLA)P48544
IntAct (EBI)P48544
BioGRIDKCNJ5
InParanoidP48544
Interologous Interaction database P48544
IntegromeDBKCNJ5
STRING (EMBL)KCNJ5
Ontologies - Pathways
Ontology : AmiGOinward rectifier potassium channel activity  protein binding  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  G-protein activated inward rectifier potassium channel activity  regulation of ion transmembrane transport  potassium ion transmembrane transport  potassium ion transmembrane transport  potassium ion transmembrane transport  
Ontology : EGO-EBIinward rectifier potassium channel activity  protein binding  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  G-protein activated inward rectifier potassium channel activity  regulation of ion transmembrane transport  potassium ion transmembrane transport  potassium ion transmembrane transport  potassium ion transmembrane transport  
Pathways : KEGGCircadian entrainment    Retrograde endocannabinoid signaling    Serotonergic synapse    Dopaminergic synapse    Estrogen signaling pathway    Morphine addiction   
Protein Interaction DatabaseKCNJ5
Wikipedia pathwaysKCNJ5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNJ5
snp3D : Map Gene to Disease3762
SNP (GeneSNP Utah)KCNJ5
SNP : HGBaseKCNJ5
Genetic variants : HAPMAPKCNJ5
Exome VariantKCNJ5
1000_GenomesKCNJ5 
Cancer Gene: CensusKCNJ5 
Somatic Mutations in Cancer : COSMICKCNJ5 
CONAN: Copy Number AnalysisKCNJ5 
Mutations and Diseases : HGMDKCNJ5
Mutations and Diseases : intOGenKCNJ5
Genomic VariantsKCNJ5  KCNJ5 [DGVbeta]
dbVarKCNJ5
ClinVarKCNJ5
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600734    613485    613677   
MedgenKCNJ5
GENETestsKCNJ5
Disease Genetic AssociationKCNJ5
Huge Navigator KCNJ5 [HugePedia]  KCNJ5 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneKCNJ5
Homology/Alignments : Family Browser (UCSC)KCNJ5
Phylogenetic Trees/Animal Genes : TreeFamKCNJ5
Chemical/Protein Interactions : CTD3762
Chemical/Pharm GKB GenePA216
Clinical trialKCNJ5
Other databases
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
CoreMineKCNJ5
iHOPKCNJ5
OncoSearchKCNJ5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:51:36 CEST 2014

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