Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KCNJ5 (potassium inwardly-rectifying channel, subfamily J, member 5)

Identity

Other namesCIR
GIRK4
KATP1
KIR3.4
LQT13
HGNC (Hugo) KCNJ5
LocusID (NCBI) 3762
Location 11q24.3
Location_base_pair Starts at 128761313 and ends at 128787951 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNJ5   6266
Entrez_Gene (NCBI)KCNJ5  3762  potassium inwardly-rectifying channel, subfamily J, member 5
Cards
GeneCards (Weizmann)KCNJ5
Ensembl (Hinxton)ENSG00000120457 [Gene_View]  chr11:128761313-128787951 [Contig_View]  KCNJ5 [Vega]
AceView (NCBI)KCNJ5
Genatlas (Paris)KCNJ5
SOURCE (Stanford)NM_000890
Genomic and cartography
GoldenPath (UCSC)KCNJ5  -  11q24.3   chr11:128761313-128787951 +  11q24.3   [Description]    (hg19-Feb_2009)
EnsemblKCNJ5 - 11q24.3 [CytoView]
Mapping of homologs : NCBIKCNJ5 [Mapview]
OMIM600734   613485   613677   
Gene and transcription
Genbank (Entrez)AB690268 AK312837 BC069386 BC069482 BC069499
RefSeq transcript (SRS)NM_000890
RefSeq transcript (Entrez)NM_000890
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NG_023406 NT_033899 NW_001838044 NW_004078073
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_023406 NT_033899 NW_001838044 NW_004078073
Consensus coding sequences : CCDS (NCBI)KCNJ5
Cluster EST : UnigeneHs.632109 [ SRS ] Hs.632109 [ NCBI ]
CGAP (NCI)Hs.632109
Alternative Splicing : Fast-db (Paris)GSHG0005398
Alternative Splicing GalleryENSG00000120457
Gene ExpressionKCNJ5 [ NCBI-GEO ]   KCNJ5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48544 (SRS) P48544 (Uniprot)
NextProtP48544
With graphics : InterProP48544
Splice isoforms : SwissVarP48544(Swissvar)
Domains : Interpro (SRS)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir3.4    K_chnl_inward-rec_Kir_cyto   
Domains : Interpro (EBI)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir3.4    K_chnl_inward-rec_Kir_cyto   
Related proteins : CluSTrP48544
Domain families : Pfam (SRS)IRK (PF01007)   
Domain families : Pfam (Sanger)IRK (PF01007)   
Domain families : Pfam (NCBI)pfam01007   
DMDM3762
Blocks (Seattle)P48544
Human Protein AtlasENSG00000120457
HPRD09010
IPIIPI00298865   IPI00985408   IPI00981047   
Protein Interaction databases
DIP (DOE-UCLA)P48544
IntAct (EBI)P48544
FunCoupENSG00000120457
REACTOMEKCNJ5
Protein Interaction Database3762
BioGRIDKCNJ5
InParanoidP48544
Interologous Interaction database P48544
IntegromeDBKCNJ5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNJ5
SNP (GeneSNP Utah)KCNJ5
SNP : HGBaseKCNJ5
Genetic variants : HAPMAPKCNJ5
Somatic Mutations in Cancer : COSMICKCNJ5 
CONAN: Copy Number AnalysisKCNJ5 
Mutations and Diseases : HGMDKCNJ5
OMIM600734    613485    613677   
GENETests600734    613485    613677   
Disease Genetic AssociationKCNJ5
Huge Navigator KCNJ5 [HugePedia]  KCNJ5 [HugeCancerGEM]
Genomic VariantsKCNJ5  KCNJ5 [DGVbeta]
snp3D : Map Gene to Disease3762
General knowledge
Homologs : HomoloGeneKCNJ5
Homology/Alignments : Family Browser (UCSC)KCNJ5
Phylogenetic Trees/Animal Genes : TreeFamKCNJ5
Chemical/Protein Interactions : CTD3762
Chemical/Pharm GKB GenePA216
Clinical trialKCNJ5
Cancer Resource (Charite)ENSG00000120457
Ontology : AmiGOinward rectifier potassium channel activity  protein binding  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  external side of plasma membrane  G-protein activated inward rectifier potassium channel activity  T-tubule  
Ontology : EGO-EBIinward rectifier potassium channel activity  protein binding  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  external side of plasma membrane  G-protein activated inward rectifier potassium channel activity  T-tubule  
Other databases
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
PubGeneKCNJ5
iHOPKCNJ5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:40 CEST 2013
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