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KDM2A (lysine demethylase 2A)

Identity

Alias (NCBI)CXXC8
FBL11
FBL7
FBXL11
JHDM1A
LILINA
HGNC (Hugo) KDM2A
HGNC Alias symbKIAA1004
FBL11
LILINA
DKFZP434M1735
FBL7
FLJ00115
CXXC8
JHDM1A
HGNC Alias nameF-box protein FBL11
 jumonji C domain-containing histone demethylase 1A
HGNC Previous nameFBXL11
HGNC Previous nameF-box and leucine-rich repeat protein 11
 lysine (K)-specific demethylase 2A
LocusID (NCBI) 22992
Atlas_Id 40540
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67119263 and ends at 67258079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AAAS (12q13.13) / KDM2A (11q13.2)IGSF3 (1p13.1) / KDM2A (11q13.2)KDM2A (11q13.2) / C11orf80 (11q13.2)
KDM2A (11q13.2) / DDR2 (1q23.3)KDM2A (11q13.2) / FBXO3 (11p13)KDM2A (11q13.2) / GLB1L2 (11q25)
KDM2A (11q13.2) / GRIP1 (12q14.3)KDM2A (11q13.2) / KDM2A (11q13.2)KDM2A (11q13.2) / MAP3K3 (17q23.3)
KDM2A (11q13.2) / PACS1 (11q13.1)KDM2A (11q13.2) / PPP6R3 (11q13.2)KDM2A (11q13.2) / RHOD (11q13.2)
KDM2A (11q13.2) / SLC6A19 (5p15.33)KDM2A (11q13.2) / SYT12 (11q13.2)KDM2A (11q13.2) / TMEM71 (8q24.22)
PACS1 (11q13.1) / KDM2A (11q13.2)PCF11 (11q14.1) / KDM2A (11q13.2)PPP2R5B (11q13.1) / KDM2A (11q13.2)
RPS6KB2 (11q13.2) / KDM2A (11q13.2)SLC44A1 (9q31.1) / KDM2A (11q13.2)IGSF3 1p13.1 / KDM2A 11q13.2
KDM2A 11q13.2 / C11orf80 11q13.2KDM2A 11q13.2 / DDR2 1q23.3KDM2A 11q13.2 / FBXO3 11p13
KDM2A 11q13.2 / GRIP1 12q14.3KDM2A 11q13.2 / MAP3K3 17q23.3KDM2A 11q13.2 / PACS1 11q13.1
KDM2A 11q13.2 / PPP6R3 11q13.2KDM2A 11q13.2 / RHOD 11q13.2KDM2A 11q13.2 / SYT12 11q13.2
PCF11 11q14.1 / KDM2A 11q13.2PPP2R5B 11q13.1 / KDM2A 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)KDM2A   13606
Cards
Entrez_Gene (NCBI)KDM2A    lysine demethylase 2A
AliasesCXXC8; FBL11; FBL7; FBXL11; 
JHDM1A; LILINA
GeneCards (Weizmann)KDM2A
Ensembl hg19 (Hinxton)ENSG00000173120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173120 [Gene_View]  ENSG00000173120 [Sequence]  chr11:67119263-67258079 [Contig_View]  KDM2A [Vega]
ICGC DataPortalENSG00000173120
TCGA cBioPortalKDM2A
AceView (NCBI)KDM2A
Genatlas (Paris)KDM2A
SOURCE (Princeton)KDM2A
Genetics Home Reference (NIH)KDM2A
Genomic and cartography
GoldenPath hg38 (UCSC)KDM2A  -     chr11:67119263-67258079 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KDM2A  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathKDM2A - 11q13.2 [CytoView hg19]  KDM2A - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000173120
genome Data Viewer NCBIKDM2A [Mapview hg19]  
OMIM605657   
Gene and transcription
Genbank (Entrez)AB023221 AB490246 AF179221 AI185920 AK022684
RefSeq transcript (Entrez)NM_001256405 NM_012308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KDM2A
Alternative Splicing GalleryENSG00000173120
Gene ExpressionKDM2A [ NCBI-GEO ]   KDM2A [ EBI - ARRAY_EXPRESS ]   KDM2A [ SEEK ]   KDM2A [ MEM ]
Gene Expression Viewer (FireBrowse)KDM2A [ Firebrowse - Broad ]
GenevisibleExpression of KDM2A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22992
GTEX Portal (Tissue expression)KDM2A
Human Protein AtlasENSG00000173120-KDM2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KDM2A
Blocks (Seattle)KDM2A
Human Protein Atlas [tissue]ENSG00000173120-KDM2A [tissue]
HPRD05741
IPIIPI00166009   IPI00739880   IPI00737083   IPI00908626   IPI00975919   
Protein Interaction databases
BioGRIDKDM2A
STRING (EMBL)KDM2A
ZODIACKDM2A
Ontologies - Pathways
Litterature
PubMed86 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKDM2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:27:43 CET 2021

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