Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KIAA0556 (-)

Identity

Alias_symbol (synonym)JBTS26
KATNIP
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 23247
Atlas_Id 54405
Location 16p12.1  [Link to chromosome band 16p12]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA0556 (16p12.1) / KIAA0556 (16p12.1)KIAA0556 (16p12.1) / LETM2 (8p11.23)KIAA0556 (16p12.1) / LSM1 (8p11.23)
KIAA0556 (16p12.1) / NECAB2 (16q23.3)KIAA0556 16p12.1 / NECAB2 16q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  Lung: Translocations in Squamous Cell Carcinoma
t(8;16)(p11;p12) KIAA0556/LSM1
t(16;16)(p12;q23) KIAA0556/NECAB2


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)KIAA0556  23247  -
Aliases
GeneCards (Weizmann)KIAA0556
Ensembl hg19 (Hinxton)ENSG00000047578 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000047578 [Gene_View]  ENSG00000047578 [Sequence]  - [Contig_View]  KIAA0556 [Vega]
ICGC DataPortalENSG00000047578
TCGA cBioPortalKIAA0556
AceView (NCBI)KIAA0556
Genatlas (Paris)KIAA0556
WikiGenes23247
SOURCE (Princeton)KIAA0556
Genetics Home Reference (NIH)KIAA0556
Genomic and cartography
GoldenPath hg38 (UCSC)KIAA0556  -  
GoldenPath hg19 (UCSC)KIAA0556  -  
GoldenPathKIAA0556 - [CytoView hg19]  KIAA0556 - [CytoView hg38]
ImmunoBaseENSG00000047578
genome Data Viewer NCBIKIAA0556 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIAA0556
Alternative Splicing GalleryENSG00000047578
Gene ExpressionKIAA0556 [ NCBI-GEO ]   KIAA0556 [ EBI - ARRAY_EXPRESS ]   KIAA0556 [ SEEK ]   KIAA0556 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA0556 [ Firebrowse - Broad ]
GenevisibleExpression of KIAA0556 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23247
GTEX Portal (Tissue expression)KIAA0556
Human Protein AtlasENSG00000047578-KIAA0556 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KIAA0556
DMDM Disease mutations23247
Blocks (Seattle)KIAA0556
Human Protein Atlas [tissue]ENSG00000047578-KIAA0556 [tissue]
HPRD13806
IPIIPI00030790   IPI00297877   
Protein Interaction databases
FunCoupENSG00000047578
BioGRIDKIAA0556
STRING (EMBL)KIAA0556
ZODIACKIAA0556
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease23247
BioCentury BCIQKIAA0556
ClinGenKIAA0556
Clinical trials, drugs, therapy
Protein Interactions : CTD23247
Pharm GKB GenePA162392880
Clinical trialKIAA0556
Miscellaneous
canSAR (ICR)KIAA0556 (select the gene name)
HarmonizomeKIAA0556
DataMed IndexKIAA0556
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA0556
EVEXKIAA0556
GoPubMedKIAA0556
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 10 19:24:05 CEST 2020

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