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LGALS13 (galectin 13)

Identity

Alias_nameslectin, galactoside-binding, soluble, 13
Alias_symbol (synonym)PP13
PLAC8
Other aliasGAL13
HGNC (Hugo) LGALS13
LocusID (NCBI) 29124
Atlas_Id 41142
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39602529 and ends at 39607474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LGALS13   15449
Cards
Entrez_Gene (NCBI)LGALS13  29124  galectin 13
AliasesGAL13; PLAC8; PP13
GeneCards (Weizmann)LGALS13
Ensembl hg19 (Hinxton)ENSG00000105198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105198 [Gene_View]  ENSG00000105198 [Sequence]  chr19:39602529-39607474 [Contig_View]  LGALS13 [Vega]
ICGC DataPortalENSG00000105198
TCGA cBioPortalLGALS13
AceView (NCBI)LGALS13
Genatlas (Paris)LGALS13
WikiGenes29124
SOURCE (Princeton)LGALS13
Genetics Home Reference (NIH)LGALS13
Genomic and cartography
GoldenPath hg38 (UCSC)LGALS13  -     chr19:39602529-39607474 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LGALS13  -     19q13.2   [Description]    (hg19-Feb_2009)
GoldenPathLGALS13 - 19q13.2 [CytoView hg19]  LGALS13 - 19q13.2 [CytoView hg38]
ImmunoBaseENSG00000105198
Mapping of homologs : NCBILGALS13 [Mapview hg19]  LGALS13 [Mapview hg38]
OMIM608717   
Gene and transcription
Genbank (Entrez)AF117383 AY055826 BC066304 BC069312 FJ613336
RefSeq transcript (Entrez)NM_013268
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LGALS13
Cluster EST : UnigeneHs.23671 [ NCBI ]
CGAP (NCI)Hs.23671
Alternative Splicing GalleryENSG00000105198
Gene ExpressionLGALS13 [ NCBI-GEO ]   LGALS13 [ EBI - ARRAY_EXPRESS ]   LGALS13 [ SEEK ]   LGALS13 [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29124
GTEX Portal (Tissue expression)LGALS13
Human Protein AtlasENSG00000105198-LGALS13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHV8
Splice isoforms : SwissVarQ9UHV8
PhosPhoSitePlusQ9UHV8
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom_sf    Galectin_13    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALS13
DMDM Disease mutations29124
Blocks (Seattle)LGALS13
PDB (RSDB)1F87    5XG7    5XG8    5Y03   
PDB Europe1F87    5XG7    5XG8    5Y03   
PDB (PDBSum)1F87    5XG7    5XG8    5Y03   
PDB (IMB)1F87    5XG7    5XG8    5Y03   
Structural Biology KnowledgeBase1F87    5XG7    5XG8    5Y03   
SCOP (Structural Classification of Proteins)1F87    5XG7    5XG8    5Y03   
CATH (Classification of proteins structures)1F87    5XG7    5XG8    5Y03   
SuperfamilyQ9UHV8
Human Protein Atlas [tissue]ENSG00000105198-LGALS13 [tissue]
Peptide AtlasQ9UHV8
HPRD16375
IPIIPI00002276   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHV8
IntAct (EBI)Q9UHV8
FunCoupENSG00000105198
BioGRIDLGALS13
STRING (EMBL)LGALS13
ZODIACLGALS13
Ontologies - Pathways
QuickGOQ9UHV8
Ontology : AmiGOlysophospholipase activity  protein binding  cytoplasm  phospholipid metabolic process  apoptotic process  nuclear matrix  carbohydrate binding  positive regulation of T cell apoptotic process  
Ontology : EGO-EBIlysophospholipase activity  protein binding  cytoplasm  phospholipid metabolic process  apoptotic process  nuclear matrix  carbohydrate binding  positive regulation of T cell apoptotic process  
NDEx NetworkLGALS13
Atlas of Cancer Signalling NetworkLGALS13
Wikipedia pathwaysLGALS13
Orthology - Evolution
OrthoDB29124
GeneTree (enSembl)ENSG00000105198
Phylogenetic Trees/Animal Genes : TreeFamLGALS13
HOGENOMQ9UHV8
Homologs : HomoloGeneLGALS13
Homology/Alignments : Family Browser (UCSC)LGALS13
Gene fusions - Rearrangements
Fusion : QuiverLGALS13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALS13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS13
dbVarLGALS13
ClinVarLGALS13
1000_GenomesLGALS13 
Exome Variant ServerLGALS13
ExAC (Exome Aggregation Consortium)ENSG00000105198
GNOMAD BrowserENSG00000105198
Varsome BrowserLGALS13
Genetic variants : HAPMAP29124
Genomic Variants (DGV)LGALS13 [DGVbeta]
DECIPHERLGALS13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLGALS13 
Mutations
ICGC Data PortalLGALS13 
TCGA Data PortalLGALS13 
Broad Tumor PortalLGALS13
OASIS PortalLGALS13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGALS13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLGALS13
Mutations and Diseases : HGMDLGALS13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGALS13
DgiDB (Drug Gene Interaction Database)LGALS13
DoCM (Curated mutations)LGALS13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALS13 (select a term)
intoGenLGALS13
Cancer3DLGALS13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608717   
Orphanet
DisGeNETLGALS13
MedgenLGALS13
Genetic Testing Registry LGALS13
NextProtQ9UHV8 [Medical]
TSGene29124
GENETestsLGALS13
Target ValidationLGALS13
Huge Navigator LGALS13 [HugePedia]
snp3D : Map Gene to Disease29124
BioCentury BCIQLGALS13
ClinGenLGALS13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29124
Chemical/Pharm GKB GenePA134923011
Clinical trialLGALS13
Miscellaneous
canSAR (ICR)LGALS13 (select the gene name)
DataMed IndexLGALS13
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALS13
EVEXLGALS13
GoPubMedLGALS13
iHOPLGALS13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:50:31 CET 2019
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