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LHX1-DT (LHX1 divergent transcript)

Identity

Other alias-
HGNC (Hugo) LHX1-DT
LocusID (NCBI) 102723471
Atlas_Id 80609
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36861674 and ends at 36936661 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LHX1-DT   53778
Cards
Entrez_Gene (NCBI)LHX1-DT  102723471  LHX1 divergent transcript
Aliases
GeneCards (Weizmann)LHX1-DT
Ensembl hg19 (Hinxton)ENSG00000277268 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277268 [Gene_View]  ENSG00000277268 [Sequence]  chr17:36861674-36936661 [Contig_View]  LHX1-DT [Vega]
ICGC DataPortalENSG00000277268
TCGA cBioPortalLHX1-DT
AceView (NCBI)LHX1-DT
Genatlas (Paris)LHX1-DT
WikiGenes102723471
SOURCE (Princeton)LHX1-DT
Genetics Home Reference (NIH)LHX1-DT
Genomic and cartography
GoldenPath hg38 (UCSC)LHX1-DT  -     chr17:36861674-36936661 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LHX1-DT  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathLHX1-DT - 17q12 [CytoView hg19]  LHX1-DT - 17q12 [CytoView hg38]
ImmunoBaseENSG00000277268
Mapping of homologs : NCBILHX1-DT [Mapview hg19]  LHX1-DT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI492288 AW243436 BC084573 BX112232 BX115740
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NT_187614
Consensus coding sequences : CCDS (NCBI)LHX1-DT
Cluster EST : UnigeneHs.722453 [ NCBI ]
CGAP (NCI)Hs.722453
Alternative Splicing GalleryENSG00000277268
Gene ExpressionLHX1-DT [ NCBI-GEO ]   LHX1-DT [ EBI - ARRAY_EXPRESS ]   LHX1-DT [ SEEK ]   LHX1-DT [ MEM ]
Gene Expression Viewer (FireBrowse)LHX1-DT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723471
GTEX Portal (Tissue expression)LHX1-DT
Human Protein AtlasENSG00000277268-LHX1-DT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LHX1-DT
DMDM Disease mutations102723471
Blocks (Seattle)LHX1-DT
Human Protein Atlas [tissue]ENSG00000277268-LHX1-DT [tissue]
Protein Interaction databases
FunCoupENSG00000277268
BioGRIDLHX1-DT
STRING (EMBL)LHX1-DT
ZODIACLHX1-DT
Ontologies - Pathways
Huge Navigator LHX1-DT [HugePedia]
snp3D : Map Gene to Disease102723471
BioCentury BCIQLHX1-DT
ClinGenLHX1-DT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723471
Clinical trialLHX1-DT
Miscellaneous
canSAR (ICR)LHX1-DT (select the gene name)
DataMed IndexLHX1-DT
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLHX1-DT
EVEXLHX1-DT
GoPubMedLHX1-DT
iHOPLHX1-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:33:54 CEST 2019

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