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LIMS4 (LIM zinc finger domain containing 4)

Identity

Alias_namesLIMS3L
LIM and senescent cell antigen-like domains 3-like
LIM-type zinc finger domains 4
Other alias
HGNC (Hugo) LIMS4
LocusID (NCBI) 100288695
Atlas_Id 77844
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 109898432 and ends at 109906456 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LIMS4   39941
Cards
Entrez_Gene (NCBI)LIMS4  100288695  LIM zinc finger domain containing 4
AliasesLIMS3L
GeneCards (Weizmann)LIMS4
Ensembl hg19 (Hinxton)ENSG00000256671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256671 [Gene_View]  ENSG00000256671 [Sequence]  chr2:109898432-109906456 [Contig_View]  LIMS4 [Vega]
ICGC DataPortalENSG00000256671
TCGA cBioPortalLIMS4
AceView (NCBI)LIMS4
Genatlas (Paris)LIMS4
WikiGenes100288695
SOURCE (Princeton)LIMS4
Genetics Home Reference (NIH)LIMS4
Genomic and cartography
GoldenPath hg38 (UCSC)LIMS4  -     chr2:109898432-109906456 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIMS4  -     2q13   [Description]    (hg19-Feb_2009)
GoldenPathLIMS4 - 2q13 [CytoView hg19]  LIMS4 - 2q13 [CytoView hg38]
ImmunoBaseENSG00000256671
Mapping of homologs : NCBILIMS4 [Mapview hg19]  LIMS4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA609556 AF288404 AK096170 AK298340 AK300833
RefSeq transcript (Entrez)NM_001205288 NM_001371340
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIMS4
Cluster EST : UnigeneHs.735995 [ NCBI ]
CGAP (NCI)Hs.735995
Alternative Splicing GalleryENSG00000256671
Gene ExpressionLIMS4 [ NCBI-GEO ]   LIMS4 [ EBI - ARRAY_EXPRESS ]   LIMS4 [ SEEK ]   LIMS4 [ MEM ]
Gene Expression Viewer (FireBrowse)LIMS4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288695
GTEX Portal (Tissue expression)LIMS4
Human Protein AtlasENSG00000256671-LIMS4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW20
Splice isoforms : SwissVarP0CW20
PhosPhoSitePlusP0CW20
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)PINCH    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)LIMS4
DMDM Disease mutations100288695
Blocks (Seattle)LIMS4
SuperfamilyP0CW20
Human Protein Atlas [tissue]ENSG00000256671-LIMS4 [tissue]
Peptide AtlasP0CW20
IPIIPI00917369   IPI01010460   IPI00925689   
Protein Interaction databases
DIP (DOE-UCLA)P0CW20
IntAct (EBI)P0CW20
FunCoupENSG00000256671
BioGRIDLIMS4
STRING (EMBL)LIMS4
ZODIACLIMS4
Ontologies - Pathways
QuickGOP0CW20
Ontology : AmiGOprotein binding  metal ion binding  
Ontology : EGO-EBIprotein binding  metal ion binding  
NDEx NetworkLIMS4
Atlas of Cancer Signalling NetworkLIMS4
Wikipedia pathwaysLIMS4
Orthology - Evolution
OrthoDB100288695
GeneTree (enSembl)ENSG00000256671
Phylogenetic Trees/Animal Genes : TreeFamLIMS4
HOGENOMP0CW20
Homologs : HomoloGeneLIMS4
Homology/Alignments : Family Browser (UCSC)LIMS4
Gene fusions - Rearrangements
Fusion : QuiverLIMS4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIMS4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIMS4
dbVarLIMS4
ClinVarLIMS4
1000_GenomesLIMS4 
Exome Variant ServerLIMS4
ExAC (Exome Aggregation Consortium)ENSG00000256671
GNOMAD BrowserENSG00000256671
Varsome BrowserLIMS4
Genetic variants : HAPMAP100288695
Genomic Variants (DGV)LIMS4 [DGVbeta]
DECIPHERLIMS4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIMS4 
Mutations
ICGC Data PortalLIMS4 
TCGA Data PortalLIMS4 
Broad Tumor PortalLIMS4
OASIS PortalLIMS4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLIMS4
BioMutasearch LIMS4
DgiDB (Drug Gene Interaction Database)LIMS4
DoCM (Curated mutations)LIMS4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIMS4 (select a term)
intoGenLIMS4
Cancer3DLIMS4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLIMS4
MedgenLIMS4
Genetic Testing Registry LIMS4
NextProtP0CW20 [Medical]
TSGene100288695
GENETestsLIMS4
Target ValidationLIMS4
Huge Navigator LIMS4 [HugePedia]
snp3D : Map Gene to Disease100288695
BioCentury BCIQLIMS4
ClinGenLIMS4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288695
Chemical/Pharm GKB GenePA166049042
Clinical trialLIMS4
Miscellaneous
canSAR (ICR)LIMS4 (select the gene name)
DataMed IndexLIMS4
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIMS4
EVEXLIMS4
GoPubMedLIMS4
iHOPLIMS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Sep 3 15:33:57 CEST 2019
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