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LINC00111 (long intergenic non-protein coding RNA 111)

Identity

Alias (NCBI)C21orf21
NCRNA00111
HGNC (Hugo) LINC00111
HGNC Previous nameC21orf21
 NCRNA00111
HGNC Previous namechromosome 21 open reading frame 21
 non-protein coding RNA 111
LocusID (NCBI) 54090
Atlas_Id 65291
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 41679302 and ends at 41697336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00111   1262
Cards
Entrez_Gene (NCBI)LINC00111    long intergenic non-protein coding RNA 111
AliasesC21orf21; NCRNA00111
GeneCards (Weizmann)LINC00111
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr21:41679302-41697336 [Contig_View]  LINC00111 [Vega]
TCGA cBioPortalLINC00111
AceView (NCBI)LINC00111
Genatlas (Paris)LINC00111
SOURCE (Princeton)LINC00111
Genetics Home Reference (NIH)LINC00111
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00111  -     chr21:41679302-41697336 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00111  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC00111 - 21q22.3 [CytoView hg19]  LINC00111 - 21q22.3 [CytoView hg38]
genome Data Viewer NCBILINC00111 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BX099637
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00111
Gene ExpressionLINC00111 [ NCBI-GEO ]   LINC00111 [ EBI - ARRAY_EXPRESS ]   LINC00111 [ SEEK ]   LINC00111 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00111 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00111 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54090
GTEX Portal (Tissue expression)LINC00111
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00111
Blocks (Seattle)LINC00111
Protein Interaction databases
BioGRIDLINC00111
STRING (EMBL)LINC00111
ZODIACLINC00111
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00111
EVEXLINC00111
GoPubMedLINC00111
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:59:57 CET 2020

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