Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00111 (long intergenic non-protein coding RNA 111)


Alias (NCBI)C21orf21
HGNC (Hugo) LINC00111
HGNC Previous nameC21orf21
HGNC Previous namechromosome 21 open reading frame 21
 non-protein coding RNA 111
LocusID (NCBI) 54090
Atlas_Id 65291
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 41679302 and ends at 41697336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC00111   1262
Entrez_Gene (NCBI)LINC00111    long intergenic non-protein coding RNA 111
AliasesC21orf21; NCRNA00111
GeneCards (Weizmann)LINC00111
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr21:41679302-41697336 [Contig_View]  LINC00111 [Vega]
TCGA cBioPortalLINC00111
AceView (NCBI)LINC00111
Genatlas (Paris)LINC00111
SOURCE (Princeton)LINC00111
Genetics Home Reference (NIH)LINC00111
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00111  -     chr21:41679302-41697336 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00111  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC00111 - 21q22.3 [CytoView hg19]  LINC00111 - 21q22.3 [CytoView hg38]
genome Data Viewer NCBILINC00111 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BX099637
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00111
Gene ExpressionLINC00111 [ NCBI-GEO ]   LINC00111 [ EBI - ARRAY_EXPRESS ]   LINC00111 [ SEEK ]   LINC00111 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00111 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00111 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54090
GTEX Portal (Tissue expression)LINC00111
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00111
Blocks (Seattle)LINC00111
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:59:57 CET 2020

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