Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00160 (long intergenic non-protein coding RNA 160)

Identity

Alias_namesC21orf52
NCRNA00160
chromosome 21 open reading frame 52
non-protein coding RNA 160
Other alias
HGNC (Hugo) LINC00160
LocusID (NCBI) 54064
Atlas_Id 65298
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 34723807 and ends at 34737182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00160   1294
Cards
Entrez_Gene (NCBI)LINC00160  54064  long intergenic non-protein coding RNA 160
AliasesC21orf52; NCRNA00160
GeneCards (Weizmann)LINC00160
Ensembl hg19 (Hinxton)ENSG00000230978 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230978 [Gene_View]  ENSG00000230978 [Sequence]  chr21:34723807-34737182 [Contig_View]  LINC00160 [Vega]
ICGC DataPortalENSG00000230978
TCGA cBioPortalLINC00160
AceView (NCBI)LINC00160
Genatlas (Paris)LINC00160
WikiGenes54064
SOURCE (Princeton)LINC00160
Genetics Home Reference (NIH)LINC00160
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00160  -     chr21:34723807-34737182 -  21q22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00160  -     21q22.12   [Description]    (hg19-Feb_2009)
GoldenPathLINC00160 - 21q22.12 [CytoView hg19]  LINC00160 - 21q22.12 [CytoView hg38]
ImmunoBaseENSG00000230978
Mapping of homologs : NCBILINC00160 [Mapview hg19]  LINC00160 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI761253 BF511060 BX110236
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00160
Cluster EST : UnigeneHs.436868 [ NCBI ]
CGAP (NCI)Hs.436868
Alternative Splicing GalleryENSG00000230978
Gene ExpressionLINC00160 [ NCBI-GEO ]   LINC00160 [ EBI - ARRAY_EXPRESS ]   LINC00160 [ SEEK ]   LINC00160 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00160 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)54064
GTEX Portal (Tissue expression)LINC00160
Human Protein AtlasENSG00000230978-LINC00160 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00160
DMDM Disease mutations54064
Blocks (Seattle)LINC00160
Human Protein Atlas [tissue]ENSG00000230978-LINC00160 [tissue]
Protein Interaction databases
FunCoupENSG00000230978
BioGRIDLINC00160
STRING (EMBL)LINC00160
ZODIACLINC00160
Ontologies - Pathways
Huge Navigator LINC00160 [HugePedia]
snp3D : Map Gene to Disease54064
BioCentury BCIQLINC00160
ClinGenLINC00160
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54064
Chemical/Pharm GKB GenePA164723727
Clinical trialLINC00160
Miscellaneous
canSAR (ICR)LINC00160 (select the gene name)
DataMed IndexLINC00160
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00160
EVEXLINC00160
GoPubMedLINC00160
iHOPLINC00160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:34:01 CEST 2019
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