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LINC00222 (long intergenic non-protein coding RNA 222)

Identity

Alias (NCBI)C6orf181
NCRNA00222
dJ354J5.2
HGNC (Hugo) LINC00222
HGNC Alias symbdJ354J5.2
HGNC Previous nameC6orf181
 NCRNA00222
HGNC Previous namechromosome 6 open reading frame 181
 non-protein coding RNA 222
LocusID (NCBI) 387111
Atlas_Id 57823
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 108751654 and ends at 108769942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00222   21560
Cards
Entrez_Gene (NCBI)LINC00222  387111  long intergenic non-protein coding RNA 222
AliasesC6orf181; NCRNA00222; dJ354J5.2
GeneCards (Weizmann)LINC00222
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:108751654-108769942 [Contig_View]  LINC00222 [Vega]
TCGA cBioPortalLINC00222
AceView (NCBI)LINC00222
Genatlas (Paris)LINC00222
WikiGenes387111
SOURCE (Princeton)LINC00222
Genetics Home Reference (NIH)LINC00222
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00222  -     chr6:108751654-108769942 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00222  -     6q21   [Description]    (hg19-Feb_2009)
GoldenPathLINC00222 - 6q21 [CytoView hg19]  LINC00222 - 6q21 [CytoView hg38]
genome Data Viewer NCBILINC00222 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AY927443 AY927444 AY927445 AY927446 AY927447
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00222
Gene ExpressionLINC00222 [ NCBI-GEO ]   LINC00222 [ EBI - ARRAY_EXPRESS ]   LINC00222 [ SEEK ]   LINC00222 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00222 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00222 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387111
GTEX Portal (Tissue expression)LINC00222
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00222
DMDM Disease mutations387111
Blocks (Seattle)LINC00222
Protein Interaction databases
BioGRIDLINC00222
STRING (EMBL)LINC00222
ZODIACLINC00222
Ontologies - Pathways
Huge Navigator LINC00222 [HugePedia]
snp3D : Map Gene to Disease387111
BioCentury BCIQLINC00222
ClinGenLINC00222
Clinical trials, drugs, therapy
Protein Interactions : CTD387111
Pharm GKB GenePA165618131
Clinical trialLINC00222
Miscellaneous
canSAR (ICR)LINC00222 (select the gene name)
HarmonizomeLINC00222
DataMed IndexLINC00222
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00222
EVEXLINC00222
GoPubMedLINC00222
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:20:19 CEST 2020

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