Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00298 (long intergenic non-protein coding RNA 298)

Identity

Other alias-
HGNC (Hugo) LINC00298
LocusID (NCBI) 339788
Atlas_Id 65350
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 7922425 and ends at 7976814 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00298   49257
Cards
Entrez_Gene (NCBI)LINC00298  339788  long intergenic non-protein coding RNA 298
Aliases
GeneCards (Weizmann)LINC00298
Ensembl hg19 (Hinxton)ENSG00000235665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235665 [Gene_View]  ENSG00000235665 [Sequence]  chr2:7922425-7976814 [Contig_View]  LINC00298 [Vega]
ICGC DataPortalENSG00000235665
TCGA cBioPortalLINC00298
AceView (NCBI)LINC00298
Genatlas (Paris)LINC00298
WikiGenes339788
SOURCE (Princeton)LINC00298
Genetics Home Reference (NIH)LINC00298
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00298  -     chr2:7922425-7976814 -  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00298  -     2p25.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00298 - 2p25.1 [CytoView hg19]  LINC00298 - 2p25.1 [CytoView hg38]
ImmunoBaseENSG00000235665
Mapping of homologs : NCBILINC00298 [Mapview hg19]  LINC00298 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043361 BC103700 BC104747 BC105688 BC107115
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00298
Cluster EST : UnigeneHs.46864 [ NCBI ]
CGAP (NCI)Hs.46864
Alternative Splicing GalleryENSG00000235665
Gene ExpressionLINC00298 [ NCBI-GEO ]   LINC00298 [ EBI - ARRAY_EXPRESS ]   LINC00298 [ SEEK ]   LINC00298 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00298 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)339788
GTEX Portal (Tissue expression)LINC00298
Human Protein AtlasENSG00000235665-LINC00298 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00298
DMDM Disease mutations339788
Blocks (Seattle)LINC00298
Human Protein Atlas [tissue]ENSG00000235665-LINC00298 [tissue]
Protein Interaction databases
FunCoupENSG00000235665
BioGRIDLINC00298
STRING (EMBL)LINC00298
ZODIACLINC00298
Ontologies - Pathways
Huge Navigator LINC00298 [HugePedia]
snp3D : Map Gene to Disease339788
BioCentury BCIQLINC00298
ClinGenLINC00298
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339788
Clinical trialLINC00298
Miscellaneous
canSAR (ICR)LINC00298 (select the gene name)
DataMed IndexLINC00298
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00298
EVEXLINC00298
GoPubMedLINC00298
iHOPLINC00298
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:34:11 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.