Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00354 (long intergenic non-protein coding RNA 354)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC00354
LocusID (NCBI) 101928616
Atlas_Id 65389
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 111893496 and ends at 111901176 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00354   42672
Cards
Entrez_Gene (NCBI)LINC00354  101928616  long intergenic non-protein coding RNA 354
Aliases
GeneCards (Weizmann)LINC00354
Ensembl hg19 (Hinxton)ENSG00000226903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226903 [Gene_View]  ENSG00000226903 [Sequence]  chr13:111893496-111901176 [Contig_View]  LINC00354 [Vega]
ICGC DataPortalENSG00000226903
TCGA cBioPortalLINC00354
AceView (NCBI)LINC00354
Genatlas (Paris)LINC00354
WikiGenes101928616
SOURCE (Princeton)LINC00354
Genetics Home Reference (NIH)LINC00354
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00354  -     chr13:111893496-111901176 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00354  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathLINC00354 - 13q34 [CytoView hg19]  LINC00354 - 13q34 [CytoView hg38]
ImmunoBaseENSG00000226903
genome Data Viewer NCBILINC00354 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC032817 BQ186748 BX117816 DB457517 HY022991
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00354
Alternative Splicing GalleryENSG00000226903
Gene ExpressionLINC00354 [ NCBI-GEO ]   LINC00354 [ EBI - ARRAY_EXPRESS ]   LINC00354 [ SEEK ]   LINC00354 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00354 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00354 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928616
GTEX Portal (Tissue expression)LINC00354
Human Protein AtlasENSG00000226903-LINC00354 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00354
DMDM Disease mutations101928616
Blocks (Seattle)LINC00354
Human Protein Atlas [tissue]ENSG00000226903-LINC00354 [tissue]
Protein Interaction databases
FunCoupENSG00000226903
BioGRIDLINC00354
STRING (EMBL)LINC00354
ZODIACLINC00354
Ontologies - Pathways
Huge Navigator LINC00354 [HugePedia]
snp3D : Map Gene to Disease101928616
BioCentury BCIQLINC00354
ClinGenLINC00354
Clinical trials, drugs, therapy
Protein Interactions : CTD101928616
Clinical trialLINC00354
Miscellaneous
canSAR (ICR)LINC00354 (select the gene name)
HarmonizomeLINC00354
DataMed IndexLINC00354
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00354
EVEXLINC00354
GoPubMedLINC00354
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:01:21 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.