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LINC00407 (long intergenic non-protein coding RNA 407)

Identity

Other alias-
HGNC (Hugo) LINC00407
LocusID (NCBI) 106144541
Atlas_Id 80601
Location 13q14.12  [Link to chromosome band 13q14]
Location_base_pair Starts at 44640369 and ends at 44701016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00407   42739
Cards
Entrez_Gene (NCBI)LINC00407  106144541  long intergenic non-protein coding RNA 407
Aliases
GeneCards (Weizmann)LINC00407
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr13:44640369-44701016 [Contig_View]  LINC00407 [Vega]
TCGA cBioPortalLINC00407
AceView (NCBI)LINC00407
Genatlas (Paris)LINC00407
WikiGenes106144541
SOURCE (Princeton)LINC00407
Genetics Home Reference (NIH)LINC00407
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00407  -     chr13:44640369-44701016 +  13q14.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00407  -     13q14.12   [Description]    (hg19-Feb_2009)
GoldenPathLINC00407 - 13q14.12 [CytoView hg19]  LINC00407 - 13q14.12 [CytoView hg38]
Mapping of homologs : NCBILINC00407 [Mapview hg19]  LINC00407 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG959100
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00407
Cluster EST : UnigeneHs.578031 [ NCBI ]
CGAP (NCI)Hs.578031
Gene ExpressionLINC00407 [ NCBI-GEO ]   LINC00407 [ EBI - ARRAY_EXPRESS ]   LINC00407 [ SEEK ]   LINC00407 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00407 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)106144541
GTEX Portal (Tissue expression)LINC00407
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00407
DMDM Disease mutations106144541
Blocks (Seattle)LINC00407
Protein Interaction databases
BioGRIDLINC00407
STRING (EMBL)LINC00407
ZODIACLINC00407
Ontologies - Pathways
Huge Navigator LINC00407 [HugePedia]
snp3D : Map Gene to Disease106144541
BioCentury BCIQLINC00407
ClinGenLINC00407
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD106144541
Clinical trialLINC00407
Miscellaneous
canSAR (ICR)LINC00407 (select the gene name)
DataMed IndexLINC00407
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00407
EVEXLINC00407
GoPubMedLINC00407
iHOPLINC00407
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:34:24 CEST 2019

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