Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00471 (long intergenic non-protein coding RNA 471)

Identity

Alias_namesC2orf52
chromosome 2 open reading frame 52
Alias_symbol (synonym)MGC43122
Other alias
HGNC (Hugo) LINC00471
LocusID (NCBI) 151477
Atlas_Id 65439
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231508426 and ends at 231514339 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00471   28668
Cards
Entrez_Gene (NCBI)LINC00471  151477  long intergenic non-protein coding RNA 471
AliasesC2orf52
GeneCards (Weizmann)LINC00471
Ensembl hg19 (Hinxton)ENSG00000181798 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181798 [Gene_View]  ENSG00000181798 [Sequence]  chr2:231508426-231514339 [Contig_View]  LINC00471 [Vega]
ICGC DataPortalENSG00000181798
TCGA cBioPortalLINC00471
AceView (NCBI)LINC00471
Genatlas (Paris)LINC00471
WikiGenes151477
SOURCE (Princeton)LINC00471
Genetics Home Reference (NIH)LINC00471
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00471  -     chr2:231508426-231514339 -  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00471  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00471 - 2q37.1 [CytoView hg19]  LINC00471 - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000181798
Mapping of homologs : NCBILINC00471 [Mapview hg19]  LINC00471 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033054
RefSeq transcript (Entrez)NM_173513
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00471
Cluster EST : UnigeneHs.375211 [ NCBI ]
CGAP (NCI)Hs.375211
Alternative Splicing GalleryENSG00000181798
Gene ExpressionLINC00471 [ NCBI-GEO ]   LINC00471 [ EBI - ARRAY_EXPRESS ]   LINC00471 [ SEEK ]   LINC00471 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00471 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151477
GTEX Portal (Tissue expression)LINC00471
Human Protein AtlasENSG00000181798-LINC00471 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N535   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N535  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N535
Splice isoforms : SwissVarQ8N535
PhosPhoSitePlusQ8N535
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00471
DMDM Disease mutations151477
Blocks (Seattle)LINC00471
SuperfamilyQ8N535
Human Protein Atlas [tissue]ENSG00000181798-LINC00471 [tissue]
Peptide AtlasQ8N535
HPRD14629
IPIIPI00166771   
Protein Interaction databases
DIP (DOE-UCLA)Q8N535
IntAct (EBI)Q8N535
FunCoupENSG00000181798
BioGRIDLINC00471
STRING (EMBL)LINC00471
ZODIACLINC00471
Ontologies - Pathways
QuickGOQ8N535
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00471
Atlas of Cancer Signalling NetworkLINC00471
Wikipedia pathwaysLINC00471
Orthology - Evolution
OrthoDB151477
GeneTree (enSembl)ENSG00000181798
Phylogenetic Trees/Animal Genes : TreeFamLINC00471
HOGENOMQ8N535
Homologs : HomoloGeneLINC00471
Homology/Alignments : Family Browser (UCSC)LINC00471
Gene fusions - Rearrangements
Fusion : QuiverLINC00471
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00471 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00471
dbVarLINC00471
ClinVarLINC00471
1000_GenomesLINC00471 
Exome Variant ServerLINC00471
ExAC (Exome Aggregation Consortium)ENSG00000181798
GNOMAD BrowserENSG00000181798
Varsome BrowserLINC00471
Genetic variants : HAPMAP151477
Genomic Variants (DGV)LINC00471 [DGVbeta]
DECIPHERLINC00471 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00471 
Mutations
ICGC Data PortalLINC00471 
TCGA Data PortalLINC00471 
Broad Tumor PortalLINC00471
OASIS PortalLINC00471 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00471
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00471
DgiDB (Drug Gene Interaction Database)LINC00471
DoCM (Curated mutations)LINC00471 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00471 (select a term)
intoGenLINC00471
Cancer3DLINC00471(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00471
MedgenLINC00471
Genetic Testing Registry LINC00471
NextProtQ8N535 [Medical]
TSGene151477
GENETestsLINC00471
Target ValidationLINC00471
Huge Navigator LINC00471 [HugePedia]
snp3D : Map Gene to Disease151477
BioCentury BCIQLINC00471
ClinGenLINC00471
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151477
Chemical/Pharm GKB GenePA162379204
Clinical trialLINC00471
Miscellaneous
canSAR (ICR)LINC00471 (select the gene name)
DataMed IndexLINC00471
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00471
EVEXLINC00471
GoPubMedLINC00471
iHOPLINC00471
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:34:30 CEST 2019
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