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LINC00475 (long intergenic non-protein coding RNA 475)

Identity

Alias_namesC9orf44
chromosome 9 open reading frame 44
Other alias
HGNC (Hugo) LINC00475
LocusID (NCBI) 158314
Atlas_Id 65443
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 92141467 and ends at 92159608 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00475   23569
Cards
Entrez_Gene (NCBI)LINC00475  158314  long intergenic non-protein coding RNA 475
AliasesC9orf44
GeneCards (Weizmann)LINC00475
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr9:92141467-92159608 [Contig_View]  LINC00475 [Vega]
TCGA cBioPortalLINC00475
AceView (NCBI)LINC00475
Genatlas (Paris)LINC00475
WikiGenes158314
SOURCE (Princeton)LINC00475
Genetics Home Reference (NIH)LINC00475
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00475  -     chr9:92141467-92159608 +  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00475  -     9q22.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC00475 - 9q22.31 [CytoView hg19]  LINC00475 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBILINC00475 [Mapview hg19]  LINC00475 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023662 BC128384
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00475
Cluster EST : UnigeneHs.149940 [ NCBI ]
CGAP (NCI)Hs.149940
Gene ExpressionLINC00475 [ NCBI-GEO ]   LINC00475 [ EBI - ARRAY_EXPRESS ]   LINC00475 [ SEEK ]   LINC00475 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00475 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)158314
GTEX Portal (Tissue expression)LINC00475
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00475
DMDM Disease mutations158314
Blocks (Seattle)LINC00475
Protein Interaction databases
BioGRIDLINC00475
STRING (EMBL)LINC00475
ZODIACLINC00475
Ontologies - Pathways
Huge Navigator LINC00475 [HugePedia]
snp3D : Map Gene to Disease158314
BioCentury BCIQLINC00475
ClinGenLINC00475
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158314
Chemical/Pharm GKB GenePA134942836
Clinical trialLINC00475
Miscellaneous
canSAR (ICR)LINC00475 (select the gene name)
DataMed IndexLINC00475
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00475
EVEXLINC00475
GoPubMedLINC00475
iHOPLINC00475
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:34:31 CEST 2019
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