Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00519 (long intergenic non-protein coding RNA 519)

Identity

Alias (NCBI)C14orf30
c14_5317
HGNC (Hugo) LINC00519
HGNC Previous nameC14orf30
HGNC Previous namechromosome 14 open reading frame 30
LocusID (NCBI) 161342
Atlas_Id 79651
Location 14q22.1  [Link to chromosome band 14q22]
Location_base_pair Starts at 51304311 and ends at 51328385 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00519   19838
Cards
Entrez_Gene (NCBI)LINC00519  161342  long intergenic non-protein coding RNA 519
AliasesC14orf30; c14_5317
GeneCards (Weizmann)LINC00519
Ensembl hg19 (Hinxton)ENSG00000258955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258955 [Gene_View]  ENSG00000258955 [Sequence]  chr14:51304311-51328385 [Contig_View]  LINC00519 [Vega]
ICGC DataPortalENSG00000258955
TCGA cBioPortalLINC00519
AceView (NCBI)LINC00519
Genatlas (Paris)LINC00519
WikiGenes161342
SOURCE (Princeton)LINC00519
Genetics Home Reference (NIH)LINC00519
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00519  -     chr14:51304311-51328385 -  14q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00519  -     14q22.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00519 - 14q22.1 [CytoView hg19]  LINC00519 - 14q22.1 [CytoView hg38]
ImmunoBaseENSG00000258955
genome Data Viewer NCBILINC00519 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BG121773 BM670489 CD675506
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00519
Alternative Splicing GalleryENSG00000258955
Gene ExpressionLINC00519 [ NCBI-GEO ]   LINC00519 [ EBI - ARRAY_EXPRESS ]   LINC00519 [ SEEK ]   LINC00519 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00519 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00519 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161342
GTEX Portal (Tissue expression)LINC00519
Human Protein AtlasENSG00000258955-LINC00519 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00519
DMDM Disease mutations161342
Blocks (Seattle)LINC00519
Human Protein Atlas [tissue]ENSG00000258955-LINC00519 [tissue]
Protein Interaction databases
FunCoupENSG00000258955
BioGRIDLINC00519
STRING (EMBL)LINC00519
ZODIACLINC00519
Ontologies - Pathways
Huge Navigator LINC00519 [HugePedia]
snp3D : Map Gene to Disease161342
BioCentury BCIQLINC00519
ClinGenLINC00519
Clinical trials, drugs, therapy
Protein Interactions : CTD161342
Pharm GKB GenePA134863572
Clinical trialLINC00519
Miscellaneous
canSAR (ICR)LINC00519 (select the gene name)
HarmonizomeLINC00519
DataMed IndexLINC00519
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00519
EVEXLINC00519
GoPubMedLINC00519
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:01:39 CEST 2020

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