Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00683 (long intergenic non-protein coding RNA 683)

Identity

Other alias-
HGNC (Hugo) LINC00683
LocusID (NCBI) 400660
Atlas_Id 65586
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 76619777 and ends at 76623559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00683   44467
Cards
Entrez_Gene (NCBI)LINC00683  400660  long intergenic non-protein coding RNA 683
Aliases
GeneCards (Weizmann)LINC00683
Ensembl hg19 (Hinxton)ENSG00000266256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266256 [Gene_View]  ENSG00000266256 [Sequence]  chr18:76619777-76623559 [Contig_View]  LINC00683 [Vega]
ICGC DataPortalENSG00000266256
TCGA cBioPortalLINC00683
AceView (NCBI)LINC00683
Genatlas (Paris)LINC00683
WikiGenes400660
SOURCE (Princeton)LINC00683
Genetics Home Reference (NIH)LINC00683
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00683  -     chr18:76619777-76623559 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00683  -     18q23   [Description]    (hg19-Feb_2009)
GoldenPathLINC00683 - 18q23 [CytoView hg19]  LINC00683 - 18q23 [CytoView hg38]
ImmunoBaseENSG00000266256
Mapping of homologs : NCBILINC00683 [Mapview hg19]  LINC00683 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094957 AK127565
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00683
Cluster EST : UnigeneHs.131718 [ NCBI ]
CGAP (NCI)Hs.131718
Alternative Splicing GalleryENSG00000266256
Gene ExpressionLINC00683 [ NCBI-GEO ]   LINC00683 [ EBI - ARRAY_EXPRESS ]   LINC00683 [ SEEK ]   LINC00683 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00683 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400660
GTEX Portal (Tissue expression)LINC00683
Human Protein AtlasENSG00000266256-LINC00683 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00683
DMDM Disease mutations400660
Blocks (Seattle)LINC00683
Human Protein Atlas [tissue]ENSG00000266256-LINC00683 [tissue]
Protein Interaction databases
FunCoupENSG00000266256
BioGRIDLINC00683
STRING (EMBL)LINC00683
ZODIACLINC00683
Ontologies - Pathways
Huge Navigator LINC00683 [HugePedia]
snp3D : Map Gene to Disease400660
BioCentury BCIQLINC00683
ClinGenLINC00683
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400660
Clinical trialLINC00683
Miscellaneous
canSAR (ICR)LINC00683 (select the gene name)
DataMed IndexLINC00683
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00683
EVEXLINC00683
GoPubMedLINC00683
iHOPLINC00683
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:34:57 CEST 2019
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