Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00839 (long intergenic non-protein coding RNA 839)

Identity

Other alias-
HGNC (Hugo) LINC00839
LocusID (NCBI) 84856
Atlas_Id 78166
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 42492444 and ends at 42494531 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00839   28269
Cards
Entrez_Gene (NCBI)LINC00839  84856  long intergenic non-protein coding RNA 839
Aliases
GeneCards (Weizmann)LINC00839
Ensembl hg19 (Hinxton)ENSG00000185904 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185904 [Gene_View]  ENSG00000185904 [Sequence]  chr10:42492444-42494531 [Contig_View]  LINC00839 [Vega]
ICGC DataPortalENSG00000185904
TCGA cBioPortalLINC00839
AceView (NCBI)LINC00839
Genatlas (Paris)LINC00839
WikiGenes84856
SOURCE (Princeton)LINC00839
Genetics Home Reference (NIH)LINC00839
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00839  -     chr10:42492444-42494531 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00839  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathLINC00839 - 10q11.21 [CytoView hg19]  LINC00839 - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000185904
Mapping of homologs : NCBILINC00839 [Mapview hg19]  LINC00839 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024638 AK090789 AK092104 AK293138 BC007394
RefSeq transcript (Entrez)NM_032770
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00839
Cluster EST : UnigeneHs.55977 [ NCBI ]
CGAP (NCI)Hs.55977
Alternative Splicing GalleryENSG00000185904
Gene ExpressionLINC00839 [ NCBI-GEO ]   LINC00839 [ EBI - ARRAY_EXPRESS ]   LINC00839 [ SEEK ]   LINC00839 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00839 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)84856
GTEX Portal (Tissue expression)LINC00839
Human Protein AtlasENSG00000185904-LINC00839 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00839
DMDM Disease mutations84856
Blocks (Seattle)LINC00839
Human Protein Atlas [tissue]ENSG00000185904-LINC00839 [tissue]
HPRD17516
IPIIPI00168117   IPI00984536   IPI00981017   
Protein Interaction databases
FunCoupENSG00000185904
BioGRIDLINC00839
STRING (EMBL)LINC00839
ZODIACLINC00839
Ontologies - Pathways
Huge Navigator LINC00839 [HugePedia]
snp3D : Map Gene to Disease84856
BioCentury BCIQLINC00839
ClinGenLINC00839
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84856
Chemical/Pharm GKB GenePA166048982
Clinical trialLINC00839
Miscellaneous
canSAR (ICR)LINC00839 (select the gene name)
DataMed IndexLINC00839
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00839
EVEXLINC00839
GoPubMedLINC00839
iHOPLINC00839
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:35:02 CEST 2019
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