Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00862 (long intergenic non-protein coding RNA 862)

Identity

Alias_namesC1orf98
SMIM16
chromosome 1 open reading frame 98
small integral membrane protein 16
Other alias
HGNC (Hugo) LINC00862
LocusID (NCBI) 554279
Atlas_Id 65628
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 200342544 and ends at 200373792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00862   21901
Cards
Entrez_Gene (NCBI)LINC00862  554279  long intergenic non-protein coding RNA 862
AliasesC1orf98; SMIM16
GeneCards (Weizmann)LINC00862
Ensembl hg19 (Hinxton)ENSG00000203721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203721 [Gene_View]  ENSG00000203721 [Sequence]  chr1:200342544-200373792 [Contig_View]  LINC00862 [Vega]
ICGC DataPortalENSG00000203721
TCGA cBioPortalLINC00862
AceView (NCBI)LINC00862
Genatlas (Paris)LINC00862
WikiGenes554279
SOURCE (Princeton)LINC00862
Genetics Home Reference (NIH)LINC00862
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00862  -     chr1:200342544-200373792 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00862  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00862 - 1q32.1 [CytoView hg19]  LINC00862 - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000203721
Mapping of homologs : NCBILINC00862 [Mapview hg19]  LINC00862 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040731 EU250749
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00862
Cluster EST : UnigeneHs.575858 [ NCBI ]
CGAP (NCI)Hs.575858
Alternative Splicing GalleryENSG00000203721
Gene ExpressionLINC00862 [ NCBI-GEO ]   LINC00862 [ EBI - ARRAY_EXPRESS ]   LINC00862 [ SEEK ]   LINC00862 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00862 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554279
GTEX Portal (Tissue expression)LINC00862
Human Protein AtlasENSG00000203721-LINC00862 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCI5
Splice isoforms : SwissVarA6NCI5
PhosPhoSitePlusA6NCI5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00862
DMDM Disease mutations554279
Blocks (Seattle)LINC00862
SuperfamilyA6NCI5
Human Protein Atlas [tissue]ENSG00000203721-LINC00862 [tissue]
Peptide AtlasA6NCI5
IPIIPI00647756   IPI00646286   
Protein Interaction databases
DIP (DOE-UCLA)A6NCI5
IntAct (EBI)A6NCI5
FunCoupENSG00000203721
BioGRIDLINC00862
STRING (EMBL)LINC00862
ZODIACLINC00862
Ontologies - Pathways
QuickGOA6NCI5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00862
Atlas of Cancer Signalling NetworkLINC00862
Wikipedia pathwaysLINC00862
Orthology - Evolution
OrthoDB554279
GeneTree (enSembl)ENSG00000203721
Phylogenetic Trees/Animal Genes : TreeFamLINC00862
HOGENOMA6NCI5
Homologs : HomoloGeneLINC00862
Homology/Alignments : Family Browser (UCSC)LINC00862
Gene fusions - Rearrangements
Fusion : QuiverLINC00862
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00862 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00862
dbVarLINC00862
ClinVarLINC00862
1000_GenomesLINC00862 
Exome Variant ServerLINC00862
ExAC (Exome Aggregation Consortium)ENSG00000203721
GNOMAD BrowserENSG00000203721
Varsome BrowserLINC00862
Genetic variants : HAPMAP554279
Genomic Variants (DGV)LINC00862 [DGVbeta]
DECIPHERLINC00862 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00862 
Mutations
ICGC Data PortalLINC00862 
TCGA Data PortalLINC00862 
Broad Tumor PortalLINC00862
OASIS PortalLINC00862 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00862
BioMutasearch LINC00862
DgiDB (Drug Gene Interaction Database)LINC00862
DoCM (Curated mutations)LINC00862 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00862 (select a term)
intoGenLINC00862
Cancer3DLINC00862(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00862
MedgenLINC00862
Genetic Testing Registry LINC00862
NextProtA6NCI5 [Medical]
TSGene554279
GENETestsLINC00862
Target ValidationLINC00862
Huge Navigator LINC00862 [HugePedia]
snp3D : Map Gene to Disease554279
BioCentury BCIQLINC00862
ClinGenLINC00862
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554279
Chemical/Pharm GKB GenePA142672482
Clinical trialLINC00862
Miscellaneous
canSAR (ICR)LINC00862 (select the gene name)
DataMed IndexLINC00862
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00862
EVEXLINC00862
GoPubMedLINC00862
iHOPLINC00862
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Sep 3 15:35:05 CEST 2019
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