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LINC01374 (long intergenic non-protein coding RNA 1374)

Identity

Other aliasTCONS_00018278
HGNC (Hugo) LINC01374
LocusID (NCBI) 105378425
Atlas_Id 80280
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 89853906 and ends at 89914956 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01374   50631
Cards
Entrez_Gene (NCBI)LINC01374  105378425  long intergenic non-protein coding RNA 1374
AliasesTCONS_00018278
GeneCards (Weizmann)LINC01374
Ensembl hg19 (Hinxton)ENSG00000280560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280560 [Gene_View]  ENSG00000280560 [Sequence]  chr10:89853906-89914956 [Contig_View]  LINC01374 [Vega]
ICGC DataPortalENSG00000280560
TCGA cBioPortalLINC01374
AceView (NCBI)LINC01374
Genatlas (Paris)LINC01374
WikiGenes105378425
SOURCE (Princeton)LINC01374
Genetics Home Reference (NIH)LINC01374
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01374  -     chr10:89853906-89914956 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01374  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC01374 - 10q23.31 [CytoView hg19]  LINC01374 - 10q23.31 [CytoView hg38]
ImmunoBaseENSG00000280560
Mapping of homologs : NCBILINC01374 [Mapview hg19]  LINC01374 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI126223 BX100282
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01374
Cluster EST : UnigeneHs.649301 [ NCBI ]
CGAP (NCI)Hs.649301
Alternative Splicing GalleryENSG00000280560
Gene ExpressionLINC01374 [ NCBI-GEO ]   LINC01374 [ EBI - ARRAY_EXPRESS ]   LINC01374 [ SEEK ]   LINC01374 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01374 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378425
GTEX Portal (Tissue expression)LINC01374
Human Protein AtlasENSG00000280560-LINC01374 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01374
DMDM Disease mutations105378425
Blocks (Seattle)LINC01374
Human Protein Atlas [tissue]ENSG00000280560-LINC01374 [tissue]
Protein Interaction databases
FunCoupENSG00000280560
BioGRIDLINC01374
STRING (EMBL)LINC01374
ZODIACLINC01374
Ontologies - Pathways
Huge Navigator LINC01374 [HugePedia]
snp3D : Map Gene to Disease105378425
BioCentury BCIQLINC01374
ClinGenLINC01374
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378425
Clinical trialLINC01374
Miscellaneous
canSAR (ICR)LINC01374 (select the gene name)
DataMed IndexLINC01374
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01374
EVEXLINC01374
GoPubMedLINC01374
iHOPLINC01374
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:36:13 CEST 2019

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