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LINC01545 (long intergenic non-protein coding RNA 1545)

Identity

Alias_namesCXorf31
chromosome X open reading frame 31
Alias_symbol (synonym)OTTHUMG00000021429
Other alias
HGNC (Hugo) LINC01545
LocusID (NCBI) 724087
Atlas_Id 47401
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 46887419 and ends at 46899704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JADE3 (Xp11.23) / LINC01545 (Xp11.23)SACM1L (3p21.31) / LINC01545 (Xp11.23)TFE3 (Xp11.23) / LINC01545 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(X;3)(p11;p21) SACM1L/LINC01545
TFE3/LINC01545 (Xp11)

External links

Nomenclature
HGNC (Hugo)LINC01545   17986
Cards
Entrez_Gene (NCBI)LINC01545  724087  long intergenic non-protein coding RNA 1545
AliasesCXorf31
GeneCards (Weizmann)LINC01545
Ensembl hg19 (Hinxton)ENSG00000204904 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204904 [Gene_View]  ENSG00000204904 [Sequence]  chrX:46887419-46899704 [Contig_View]  LINC01545 [Vega]
ICGC DataPortalENSG00000204904
TCGA cBioPortalLINC01545
AceView (NCBI)LINC01545
Genatlas (Paris)LINC01545
WikiGenes724087
SOURCE (Princeton)LINC01545
Genetics Home Reference (NIH)LINC01545
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01545  -     chrX:46887419-46899704 -  Xp11.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01545  -     Xp11.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC01545 - Xp11.3 [CytoView hg19]  LINC01545 - Xp11.3 [CytoView hg38]
ImmunoBaseENSG00000204904
Mapping of homologs : NCBILINC01545 [Mapview hg19]  LINC01545 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038573
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01545
Alternative Splicing GalleryENSG00000204904
Gene ExpressionLINC01545 [ NCBI-GEO ]   LINC01545 [ EBI - ARRAY_EXPRESS ]   LINC01545 [ SEEK ]   LINC01545 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01545 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)724087
GTEX Portal (Tissue expression)LINC01545
Human Protein AtlasENSG00000204904-LINC01545 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VT33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VT33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VT33
Splice isoforms : SwissVarQ5VT33
PhosPhoSitePlusQ5VT33
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01545
DMDM Disease mutations724087
Blocks (Seattle)LINC01545
SuperfamilyQ5VT33
Human Protein Atlas [tissue]ENSG00000204904-LINC01545 [tissue]
Peptide AtlasQ5VT33
IPIIPI00478354   
Protein Interaction databases
DIP (DOE-UCLA)Q5VT33
IntAct (EBI)Q5VT33
FunCoupENSG00000204904
BioGRIDLINC01545
STRING (EMBL)LINC01545
ZODIACLINC01545
Ontologies - Pathways
QuickGOQ5VT33
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01545
Atlas of Cancer Signalling NetworkLINC01545
Wikipedia pathwaysLINC01545
Orthology - Evolution
OrthoDB724087
GeneTree (enSembl)ENSG00000204904
Phylogenetic Trees/Animal Genes : TreeFamLINC01545
HOGENOMQ5VT33
Homologs : HomoloGeneLINC01545
Homology/Alignments : Family Browser (UCSC)LINC01545
Gene fusions - Rearrangements
Fusion : MitelmanJADE3/LINC01545 [Xp11.23/Xp11.23]  [t(X;X)(p11;p11)]  
Fusion : MitelmanSACM1L/LINC01545 [3p21.31/Xp11.23]  [t(X;3)(p11;p21)]  
Fusion : MitelmanTFE3/LINC01545 [Xp11.23/Xp11.23]  [t(X;X)(p11;p11)]  
Fusion : QuiverLINC01545
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01545 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01545
dbVarLINC01545
ClinVarLINC01545
1000_GenomesLINC01545 
Exome Variant ServerLINC01545
ExAC (Exome Aggregation Consortium)ENSG00000204904
GNOMAD BrowserENSG00000204904
Varsome BrowserLINC01545
Genetic variants : HAPMAP724087
Genomic Variants (DGV)LINC01545 [DGVbeta]
DECIPHERLINC01545 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01545 
Mutations
ICGC Data PortalLINC01545 
TCGA Data PortalLINC01545 
Broad Tumor PortalLINC01545
OASIS PortalLINC01545 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01545
BioMutasearch LINC01545
DgiDB (Drug Gene Interaction Database)LINC01545
DoCM (Curated mutations)LINC01545 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01545 (select a term)
intoGenLINC01545
Cancer3DLINC01545(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01545
MedgenLINC01545
Genetic Testing Registry LINC01545
NextProtQ5VT33 [Medical]
TSGene724087
GENETestsLINC01545
Target ValidationLINC01545
Huge Navigator LINC01545 [HugePedia]
snp3D : Map Gene to Disease724087
BioCentury BCIQLINC01545
ClinGenLINC01545
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD724087
Chemical/Pharm GKB GenePA145149071
Clinical trialLINC01545
Miscellaneous
canSAR (ICR)LINC01545 (select the gene name)
HarmonizomeLINC01545
DataMed IndexLINC01545
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01545
EVEXLINC01545
GoPubMedLINC01545
iHOPLINC01545
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 10 12:20:36 CEST 2020
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