Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01574 (long intergenic non-protein coding RNA 1574)

Identity

Alias_symbol (synonym)HI-LNC12
TCONS_00009551
Other alias
HGNC (Hugo) LINC01574
LocusID (NCBI) 102577424
Atlas_Id 76840
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 176743205 and ends at 176743921 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC01574   51388
Cards
Entrez_Gene (NCBI)LINC01574  102577424  long intergenic non-protein coding RNA 1574
AliasesHI-LNC12
GeneCards (Weizmann)LINC01574
Ensembl hg19 (Hinxton)ENSG00000248859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248859 [Gene_View]  ENSG00000248859 [Sequence]  chr5:176743205-176743921 [Contig_View]  LINC01574 [Vega]
ICGC DataPortalENSG00000248859
TCGA cBioPortalLINC01574
AceView (NCBI)LINC01574
Genatlas (Paris)LINC01574
WikiGenes102577424
SOURCE (Princeton)LINC01574
Genetics Home Reference (NIH)LINC01574
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01574  -     chr5:176743205-176743921 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01574  -     5q35.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC01574 - 5q35.2 [CytoView hg19]  LINC01574 - 5q35.2 [CytoView hg38]
ImmunoBaseENSG00000248859
Mapping of homologs : NCBILINC01574 [Mapview hg19]  LINC01574 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CK906254 DB500880
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01574
Cluster EST : UnigeneHs.349025 [ NCBI ]
CGAP (NCI)Hs.349025
Alternative Splicing GalleryENSG00000248859
Gene ExpressionLINC01574 [ NCBI-GEO ]   LINC01574 [ EBI - ARRAY_EXPRESS ]   LINC01574 [ SEEK ]   LINC01574 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01574 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102577424
GTEX Portal (Tissue expression)LINC01574
Human Protein AtlasENSG00000248859-LINC01574 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01574
DMDM Disease mutations102577424
Blocks (Seattle)LINC01574
Human Protein Atlas [tissue]ENSG00000248859-LINC01574 [tissue]
Protein Interaction databases
FunCoupENSG00000248859
BioGRIDLINC01574
STRING (EMBL)LINC01574
ZODIACLINC01574
Ontologies - Pathways
Huge Navigator LINC01574 [HugePedia]
snp3D : Map Gene to Disease102577424
BioCentury BCIQLINC01574
ClinGenLINC01574
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102577424
Clinical trialLINC01574
Miscellaneous
canSAR (ICR)LINC01574 (select the gene name)
DataMed IndexLINC01574
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01574
EVEXLINC01574
GoPubMedLINC01574
iHOPLINC01574
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:36:41 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.