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LINC01847 (long intergenic non-protein coding RNA 1847)

Identity

Other alias-
HGNC (Hugo) LINC01847
LocusID (NCBI) 101927766
Atlas_Id 79807
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 159776775 and ends at 159871384 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01847   52662
Cards
Entrez_Gene (NCBI)LINC01847  101927766  long intergenic non-protein coding RNA 1847
Aliases
GeneCards (Weizmann)LINC01847
Ensembl hg19 (Hinxton)ENSG00000253311 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253311 [Gene_View]  ENSG00000253311 [Sequence]  chr5:159776775-159871384 [Contig_View]  LINC01847 [Vega]
ICGC DataPortalENSG00000253311
TCGA cBioPortalLINC01847
AceView (NCBI)LINC01847
Genatlas (Paris)LINC01847
WikiGenes101927766
SOURCE (Princeton)LINC01847
Genetics Home Reference (NIH)LINC01847
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01847  -     chr5:159776775-159871384 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01847  -     5q33.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC01847 - 5q33.3 [CytoView hg19]  LINC01847 - 5q33.3 [CytoView hg38]
ImmunoBaseENSG00000253311
Mapping of homologs : NCBILINC01847 [Mapview hg19]  LINC01847 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833484
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01847
Cluster EST : UnigeneHs.638568 [ NCBI ]
CGAP (NCI)Hs.638568
Alternative Splicing GalleryENSG00000253311
Gene ExpressionLINC01847 [ NCBI-GEO ]   LINC01847 [ EBI - ARRAY_EXPRESS ]   LINC01847 [ SEEK ]   LINC01847 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01847 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927766
GTEX Portal (Tissue expression)LINC01847
Human Protein AtlasENSG00000253311-LINC01847 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01847
DMDM Disease mutations101927766
Blocks (Seattle)LINC01847
Human Protein Atlas [tissue]ENSG00000253311-LINC01847 [tissue]
Protein Interaction databases
FunCoupENSG00000253311
BioGRIDLINC01847
STRING (EMBL)LINC01847
ZODIACLINC01847
Ontologies - Pathways
Huge Navigator LINC01847 [HugePedia]
snp3D : Map Gene to Disease101927766
BioCentury BCIQLINC01847
ClinGenLINC01847
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927766
Clinical trialLINC01847
Miscellaneous
canSAR (ICR)LINC01847 (select the gene name)
DataMed IndexLINC01847
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01847
EVEXLINC01847
GoPubMedLINC01847
iHOPLINC01847
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:37:23 CEST 2019

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