Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01944 (long intergenic non-protein coding RNA 1944)

Identity

Other aliasCTB-54I1.1
HGNC (Hugo) LINC01944
LocusID (NCBI) 105377728
Atlas_Id 79523
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 172556725 and ends at 172559014 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01944   52768
Cards
Entrez_Gene (NCBI)LINC01944  105377728  long intergenic non-protein coding RNA 1944
AliasesCTB-54I1.1
GeneCards (Weizmann)LINC01944
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:172556725-172559014 [Contig_View]  LINC01944 [Vega]
TCGA cBioPortalLINC01944
AceView (NCBI)LINC01944
Genatlas (Paris)LINC01944
WikiGenes105377728
SOURCE (Princeton)LINC01944
Genetics Home Reference (NIH)LINC01944
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01944  -     chr5:172556725-172559014 -  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01944  -     5q35.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01944 - 5q35.1 [CytoView hg19]  LINC01944 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBILINC01944 [Mapview hg19]  LINC01944 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX106923
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01944
Cluster EST : UnigeneHs.131465 [ NCBI ]
CGAP (NCI)Hs.131465
Gene ExpressionLINC01944 [ NCBI-GEO ]   LINC01944 [ EBI - ARRAY_EXPRESS ]   LINC01944 [ SEEK ]   LINC01944 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01944 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377728
GTEX Portal (Tissue expression)LINC01944
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01944
DMDM Disease mutations105377728
Blocks (Seattle)LINC01944
Protein Interaction databases
BioGRIDLINC01944
STRING (EMBL)LINC01944
ZODIACLINC01944
Ontologies - Pathways
Huge Navigator LINC01944 [HugePedia]
snp3D : Map Gene to Disease105377728
BioCentury BCIQLINC01944
ClinGenLINC01944
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377728
Clinical trialLINC01944
Miscellaneous
canSAR (ICR)LINC01944 (select the gene name)
DataMed IndexLINC01944
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01944
EVEXLINC01944
GoPubMedLINC01944
iHOPLINC01944
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:37:36 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.