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LINC02039 (long intergenic non-protein coding RNA 2039)

Identity

Other alias-
HGNC (Hugo) LINC02039
LocusID (NCBI) 102546228
Atlas_Id 78984
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 126179577 and ends at 126193850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02039   52879
Cards
Entrez_Gene (NCBI)LINC02039  102546228  long intergenic non-protein coding RNA 2039
Aliases
GeneCards (Weizmann)LINC02039
Ensembl hg19 (Hinxton)ENSG00000248107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248107 [Gene_View]  ENSG00000248107 [Sequence]  chr5:126179577-126193850 [Contig_View]  LINC02039 [Vega]
ICGC DataPortalENSG00000248107
TCGA cBioPortalLINC02039
AceView (NCBI)LINC02039
Genatlas (Paris)LINC02039
WikiGenes102546228
SOURCE (Princeton)LINC02039
Genetics Home Reference (NIH)LINC02039
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02039  -     chr5:126179577-126193850 +  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02039  -     5q23.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC02039 - 5q23.2 [CytoView hg19]  LINC02039 - 5q23.2 [CytoView hg38]
ImmunoBaseENSG00000248107
Mapping of homologs : NCBILINC02039 [Mapview hg19]  LINC02039 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB032982
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02039
Cluster EST : UnigeneHs.582529 [ NCBI ]
CGAP (NCI)Hs.582529
Alternative Splicing GalleryENSG00000248107
Gene ExpressionLINC02039 [ NCBI-GEO ]   LINC02039 [ EBI - ARRAY_EXPRESS ]   LINC02039 [ SEEK ]   LINC02039 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02039 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102546228
GTEX Portal (Tissue expression)LINC02039
Human Protein AtlasENSG00000248107-LINC02039 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02039
DMDM Disease mutations102546228
Blocks (Seattle)LINC02039
Human Protein Atlas [tissue]ENSG00000248107-LINC02039 [tissue]
Protein Interaction databases
FunCoupENSG00000248107
BioGRIDLINC02039
STRING (EMBL)LINC02039
ZODIACLINC02039
Ontologies - Pathways
Huge Navigator LINC02039 [HugePedia]
snp3D : Map Gene to Disease102546228
BioCentury BCIQLINC02039
ClinGenLINC02039
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102546228
Clinical trialLINC02039
Miscellaneous
canSAR (ICR)LINC02039 (select the gene name)
DataMed IndexLINC02039
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02039
EVEXLINC02039
GoPubMedLINC02039
iHOPLINC02039
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:37:51 CEST 2019

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