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LINC02115 (long intergenic non-protein coding RNA 2115)

Identity

Other alias-
HGNC (Hugo) LINC02115
LocusID (NCBI) 102467212
Atlas_Id 80191
Location 5q21.2  [Link to chromosome band 5q21]
Location_base_pair Starts at 103528434 and ends at 103541985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02115   52970
Cards
Entrez_Gene (NCBI)LINC02115  102467212  long intergenic non-protein coding RNA 2115
Aliases
GeneCards (Weizmann)LINC02115
Ensembl hg19 (Hinxton)ENSG00000248757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248757 [Gene_View]  ENSG00000248757 [Sequence]  chr5:103528434-103541985 [Contig_View]  LINC02115 [Vega]
ICGC DataPortalENSG00000248757
TCGA cBioPortalLINC02115
AceView (NCBI)LINC02115
Genatlas (Paris)LINC02115
WikiGenes102467212
SOURCE (Princeton)LINC02115
Genetics Home Reference (NIH)LINC02115
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02115  -     chr5:103528434-103541985 -  5q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02115  -     5q21.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC02115 - 5q21.2 [CytoView hg19]  LINC02115 - 5q21.2 [CytoView hg38]
ImmunoBaseENSG00000248757
Mapping of homologs : NCBILINC02115 [Mapview hg19]  LINC02115 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB447061
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02115
Cluster EST : UnigeneHs.641885 [ NCBI ]
CGAP (NCI)Hs.641885
Alternative Splicing GalleryENSG00000248757
Gene ExpressionLINC02115 [ NCBI-GEO ]   LINC02115 [ EBI - ARRAY_EXPRESS ]   LINC02115 [ SEEK ]   LINC02115 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02115 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467212
GTEX Portal (Tissue expression)LINC02115
Human Protein AtlasENSG00000248757-LINC02115 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02115
DMDM Disease mutations102467212
Blocks (Seattle)LINC02115
Human Protein Atlas [tissue]ENSG00000248757-LINC02115 [tissue]
Protein Interaction databases
FunCoupENSG00000248757
BioGRIDLINC02115
STRING (EMBL)LINC02115
ZODIACLINC02115
Ontologies - Pathways
Huge Navigator LINC02115 [HugePedia]
snp3D : Map Gene to Disease102467212
BioCentury BCIQLINC02115
ClinGenLINC02115
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467212
Clinical trialLINC02115
Miscellaneous
canSAR (ICR)LINC02115 (select the gene name)
DataMed IndexLINC02115
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02115
EVEXLINC02115
GoPubMedLINC02115
iHOPLINC02115
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:38:02 CEST 2019

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