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LINC02118 (long intergenic non-protein coding RNA 2118)

Identity

Other alias-
HGNC (Hugo) LINC02118
LocusID (NCBI) 105378960
Atlas_Id 79146
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 52008031 and ends at 52043909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02118   52974
Cards
Entrez_Gene (NCBI)LINC02118  105378960  long intergenic non-protein coding RNA 2118
Aliases
GeneCards (Weizmann)LINC02118
Ensembl hg19 (Hinxton)ENSG00000248789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248789 [Gene_View]  ENSG00000248789 [Sequence]  chr5:52008031-52043909 [Contig_View]  LINC02118 [Vega]
ICGC DataPortalENSG00000248789
TCGA cBioPortalLINC02118
AceView (NCBI)LINC02118
Genatlas (Paris)LINC02118
WikiGenes105378960
SOURCE (Princeton)LINC02118
Genetics Home Reference (NIH)LINC02118
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02118  -     chr5:52008031-52043909 +  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02118  -     5q11.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC02118 - 5q11.2 [CytoView hg19]  LINC02118 - 5q11.2 [CytoView hg38]
ImmunoBaseENSG00000248789
Mapping of homologs : NCBILINC02118 [Mapview hg19]  LINC02118 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CA948010 CA948270
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02118
Cluster EST : UnigeneHs.639311 [ NCBI ]
CGAP (NCI)Hs.639311
Alternative Splicing GalleryENSG00000248789
Gene ExpressionLINC02118 [ NCBI-GEO ]   LINC02118 [ EBI - ARRAY_EXPRESS ]   LINC02118 [ SEEK ]   LINC02118 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02118 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378960
GTEX Portal (Tissue expression)LINC02118
Human Protein AtlasENSG00000248789-LINC02118 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02118
DMDM Disease mutations105378960
Blocks (Seattle)LINC02118
Human Protein Atlas [tissue]ENSG00000248789-LINC02118 [tissue]
Protein Interaction databases
FunCoupENSG00000248789
BioGRIDLINC02118
STRING (EMBL)LINC02118
ZODIACLINC02118
Ontologies - Pathways
Huge Navigator LINC02118 [HugePedia]
snp3D : Map Gene to Disease105378960
BioCentury BCIQLINC02118
ClinGenLINC02118
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378960
Clinical trialLINC02118
Miscellaneous
canSAR (ICR)LINC02118 (select the gene name)
DataMed IndexLINC02118
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02118
EVEXLINC02118
GoPubMedLINC02118
iHOPLINC02118
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:38:03 CEST 2019

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