Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC02120 (long intergenic non-protein coding RNA 2120)

Identity

Other alias-
HGNC (Hugo) LINC02120
LocusID (NCBI) 340113
Atlas_Id 79100
Location 5p13.3  [Link to chromosome band 5p13]
Location_base_pair Starts at 32947443 and ends at 32962467 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02120   27971
Cards
Entrez_Gene (NCBI)LINC02120  340113  long intergenic non-protein coding RNA 2120
Aliases
GeneCards (Weizmann)LINC02120
Ensembl hg19 (Hinxton)ENSG00000248279 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248279 [Gene_View]  ENSG00000248279 [Sequence]  chr5:32947443-32962467 [Contig_View]  LINC02120 [Vega]
ICGC DataPortalENSG00000248279
TCGA cBioPortalLINC02120
AceView (NCBI)LINC02120
Genatlas (Paris)LINC02120
WikiGenes340113
SOURCE (Princeton)LINC02120
Genetics Home Reference (NIH)LINC02120
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02120  -     chr5:32947443-32962467 +  5p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02120  -     5p13.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC02120 - 5p13.3 [CytoView hg19]  LINC02120 - 5p13.3 [CytoView hg38]
ImmunoBaseENSG00000248279
Mapping of homologs : NCBILINC02120 [Mapview hg19]  LINC02120 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC044935 BC143768
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02120
Cluster EST : UnigeneHs.434404 [ NCBI ]
CGAP (NCI)Hs.434404
Alternative Splicing GalleryENSG00000248279
Gene ExpressionLINC02120 [ NCBI-GEO ]   LINC02120 [ EBI - ARRAY_EXPRESS ]   LINC02120 [ SEEK ]   LINC02120 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02120 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)340113
GTEX Portal (Tissue expression)LINC02120
Human Protein AtlasENSG00000248279-LINC02120 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02120
DMDM Disease mutations340113
Blocks (Seattle)LINC02120
Human Protein Atlas [tissue]ENSG00000248279-LINC02120 [tissue]
Protein Interaction databases
FunCoupENSG00000248279
BioGRIDLINC02120
STRING (EMBL)LINC02120
ZODIACLINC02120
Ontologies - Pathways
Huge Navigator LINC02120 [HugePedia]
snp3D : Map Gene to Disease340113
BioCentury BCIQLINC02120
ClinGenLINC02120
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340113
Clinical trialLINC02120
Miscellaneous
canSAR (ICR)LINC02120 (select the gene name)
DataMed IndexLINC02120
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02120
EVEXLINC02120
GoPubMedLINC02120
iHOPLINC02120
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:38:03 CEST 2019

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