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LINC02208 (long intergenic non-protein coding RNA 2208)

Identity

Alias_symbol (synonym)HRAT56
Other alias
HGNC (Hugo) LINC02208
LocusID (NCBI) 101927280
Atlas_Id 80260
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 118350973 and ends at 118562117 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02208   52978
Cards
Entrez_Gene (NCBI)LINC02208  101927280  long intergenic non-protein coding RNA 2208
AliasesHRAT56
GeneCards (Weizmann)LINC02208
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:118350973-118562117 [Contig_View]  LINC02208 [Vega]
TCGA cBioPortalLINC02208
AceView (NCBI)LINC02208
Genatlas (Paris)LINC02208
WikiGenes101927280
SOURCE (Princeton)LINC02208
Genetics Home Reference (NIH)LINC02208
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02208  -     chr5:118350973-118562117 -  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02208  -     5q23.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02208 - 5q23.1 [CytoView hg19]  LINC02208 - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBILINC02208 [Mapview hg19]  LINC02208 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR627150
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02208
Cluster EST : UnigeneHs.543951 [ NCBI ]
CGAP (NCI)Hs.543951
Gene ExpressionLINC02208 [ NCBI-GEO ]   LINC02208 [ EBI - ARRAY_EXPRESS ]   LINC02208 [ SEEK ]   LINC02208 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02208 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927280
GTEX Portal (Tissue expression)LINC02208
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02208
DMDM Disease mutations101927280
Blocks (Seattle)LINC02208
Protein Interaction databases
BioGRIDLINC02208
STRING (EMBL)LINC02208
ZODIACLINC02208
Ontologies - Pathways
Huge Navigator LINC02208 [HugePedia]
snp3D : Map Gene to Disease101927280
BioCentury BCIQLINC02208
ClinGenLINC02208
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927280
Clinical trialLINC02208
Miscellaneous
canSAR (ICR)LINC02208 (select the gene name)
DataMed IndexLINC02208
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02208
EVEXLINC02208
GoPubMedLINC02208
iHOPLINC02208
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:38:15 CEST 2019

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