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LINC02215 (long intergenic non-protein coding RNA 2215)

Identity

Other alias-
HGNC (Hugo) LINC02215
LocusID (NCBI) 102467225
Atlas_Id 79876
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 118596188 and ends at 118628092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02215   53082
Cards
Entrez_Gene (NCBI)LINC02215  102467225  long intergenic non-protein coding RNA 2215
Aliases
GeneCards (Weizmann)LINC02215
Ensembl hg19 (Hinxton)ENSG00000249128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249128 [Gene_View]  ENSG00000249128 [Sequence]  chr5:118596188-118628092 [Contig_View]  LINC02215 [Vega]
ICGC DataPortalENSG00000249128
TCGA cBioPortalLINC02215
AceView (NCBI)LINC02215
Genatlas (Paris)LINC02215
WikiGenes102467225
SOURCE (Princeton)LINC02215
Genetics Home Reference (NIH)LINC02215
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02215  -     chr5:118596188-118628092 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02215  -     5q23.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02215 - 5q23.1 [CytoView hg19]  LINC02215 - 5q23.1 [CytoView hg38]
ImmunoBaseENSG00000249128
Mapping of homologs : NCBILINC02215 [Mapview hg19]  LINC02215 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB337424
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02215
Cluster EST : UnigeneHs.582523 [ NCBI ]
CGAP (NCI)Hs.582523
Alternative Splicing GalleryENSG00000249128
Gene ExpressionLINC02215 [ NCBI-GEO ]   LINC02215 [ EBI - ARRAY_EXPRESS ]   LINC02215 [ SEEK ]   LINC02215 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02215 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467225
GTEX Portal (Tissue expression)LINC02215
Human Protein AtlasENSG00000249128-LINC02215 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02215
DMDM Disease mutations102467225
Blocks (Seattle)LINC02215
Human Protein Atlas [tissue]ENSG00000249128-LINC02215 [tissue]
Protein Interaction databases
FunCoupENSG00000249128
BioGRIDLINC02215
STRING (EMBL)LINC02215
ZODIACLINC02215
Ontologies - Pathways
Huge Navigator LINC02215 [HugePedia]
snp3D : Map Gene to Disease102467225
BioCentury BCIQLINC02215
ClinGenLINC02215
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467225
Clinical trialLINC02215
Miscellaneous
canSAR (ICR)LINC02215 (select the gene name)
DataMed IndexLINC02215
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02215
EVEXLINC02215
GoPubMedLINC02215
iHOPLINC02215
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:38:17 CEST 2019

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