Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02229 (long intergenic non-protein coding RNA 2229)

Identity

Other alias-
HGNC (Hugo) LINC02229
LocusID (NCBI) 101928769
Atlas_Id 79008
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 66507545 and ends at 66511604 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02229   53098
Cards
Entrez_Gene (NCBI)LINC02229  101928769  long intergenic non-protein coding RNA 2229
Aliases
GeneCards (Weizmann)LINC02229
Ensembl hg19 (Hinxton)ENSG00000250313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250313 [Gene_View]  ENSG00000250313 [Sequence]  chr5:66507545-66511604 [Contig_View]  LINC02229 [Vega]
ICGC DataPortalENSG00000250313
TCGA cBioPortalLINC02229
AceView (NCBI)LINC02229
Genatlas (Paris)LINC02229
WikiGenes101928769
SOURCE (Princeton)LINC02229
Genetics Home Reference (NIH)LINC02229
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02229  -     chr5:66507545-66511604 -  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02229  -     5q12.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC02229 - 5q12.3 [CytoView hg19]  LINC02229 - 5q12.3 [CytoView hg38]
ImmunoBaseENSG00000250313
Mapping of homologs : NCBILINC02229 [Mapview hg19]  LINC02229 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA412311 BX094613
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02229
Cluster EST : UnigeneHs.738177 [ NCBI ]
CGAP (NCI)Hs.738177
Alternative Splicing GalleryENSG00000250313
Gene ExpressionLINC02229 [ NCBI-GEO ]   LINC02229 [ EBI - ARRAY_EXPRESS ]   LINC02229 [ SEEK ]   LINC02229 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02229 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928769
GTEX Portal (Tissue expression)LINC02229
Human Protein AtlasENSG00000250313-LINC02229 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02229
DMDM Disease mutations101928769
Blocks (Seattle)LINC02229
Human Protein Atlas [tissue]ENSG00000250313-LINC02229 [tissue]
Protein Interaction databases
FunCoupENSG00000250313
BioGRIDLINC02229
STRING (EMBL)LINC02229
ZODIACLINC02229
Ontologies - Pathways
Huge Navigator LINC02229 [HugePedia]
snp3D : Map Gene to Disease101928769
BioCentury BCIQLINC02229
ClinGenLINC02229
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928769
Clinical trialLINC02229
Miscellaneous
canSAR (ICR)LINC02229 (select the gene name)
DataMed IndexLINC02229
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02229
EVEXLINC02229
GoPubMedLINC02229
iHOPLINC02229
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:38:19 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.