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LINC02236 (long intergenic non-protein coding RNA 2236)

Identity

Alias_symbol (synonym)RP11-332J15.1
Other alias-
HGNC (Hugo) LINC02236
LocusID (NCBI) 109729133
Atlas_Id 79316
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 6795880 and ends at 6826728 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02236   53107
Cards
Entrez_Gene (NCBI)LINC02236  109729133  long intergenic non-protein coding RNA 2236
Aliases
GeneCards (Weizmann)LINC02236
Ensembl hg19 (Hinxton)ENSG00000251365 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251365 [Gene_View]  ENSG00000251365 [Sequence]  chr5:6795880-6826728 [Contig_View]  LINC02236 [Vega]
ICGC DataPortalENSG00000251365
TCGA cBioPortalLINC02236
AceView (NCBI)LINC02236
Genatlas (Paris)LINC02236
WikiGenes109729133
SOURCE (Princeton)LINC02236
Genetics Home Reference (NIH)LINC02236
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02236  -     chr5:6795880-6826728 +  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02236  -     5p15.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC02236 - 5p15.31 [CytoView hg19]  LINC02236 - 5p15.31 [CytoView hg38]
ImmunoBaseENSG00000251365
Mapping of homologs : NCBILINC02236 [Mapview hg19]  LINC02236 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA174224
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02236
Cluster EST : UnigeneHs.582455 [ NCBI ]
CGAP (NCI)Hs.582455
Alternative Splicing GalleryENSG00000251365
Gene ExpressionLINC02236 [ NCBI-GEO ]   LINC02236 [ EBI - ARRAY_EXPRESS ]   LINC02236 [ SEEK ]   LINC02236 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02236 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109729133
GTEX Portal (Tissue expression)LINC02236
Human Protein AtlasENSG00000251365-LINC02236 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02236
DMDM Disease mutations109729133
Blocks (Seattle)LINC02236
Human Protein Atlas [tissue]ENSG00000251365-LINC02236 [tissue]
Protein Interaction databases
FunCoupENSG00000251365
BioGRIDLINC02236
STRING (EMBL)LINC02236
ZODIACLINC02236
Ontologies - Pathways
Huge Navigator LINC02236 [HugePedia]
snp3D : Map Gene to Disease109729133
BioCentury BCIQLINC02236
ClinGenLINC02236
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109729133
Clinical trialLINC02236
Miscellaneous
canSAR (ICR)LINC02236 (select the gene name)
DataMed IndexLINC02236
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02236
EVEXLINC02236
GoPubMedLINC02236
iHOPLINC02236
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:38:20 CEST 2019

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