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LINC02488 (long intergenic non-protein coding RNA 2488)

Identity

Other aliasCTD-2316B1
HGNC (Hugo) LINC02488
LocusID (NCBI) 111082994
Atlas_Id 80646
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 87662042 and ends at 87679409 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02488   53467
Cards
Entrez_Gene (NCBI)LINC02488  111082994  long intergenic non-protein coding RNA 2488
AliasesCTD-2316B1
GeneCards (Weizmann)LINC02488
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:87662042-87679409 [Contig_View]  LINC02488 [Vega]
TCGA cBioPortalLINC02488
AceView (NCBI)LINC02488
Genatlas (Paris)LINC02488
WikiGenes111082994
SOURCE (Princeton)LINC02488
Genetics Home Reference (NIH)LINC02488
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02488  -     chr5:87662042-87679409 +  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02488  -     5q14.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC02488 - 5q14.3 [CytoView hg19]  LINC02488 - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBILINC02488 [Mapview hg19]  LINC02488 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI928860 AI929023 DR033777
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02488
Cluster EST : UnigeneHs.544037 [ NCBI ]
CGAP (NCI)Hs.544037
Gene ExpressionLINC02488 [ NCBI-GEO ]   LINC02488 [ EBI - ARRAY_EXPRESS ]   LINC02488 [ SEEK ]   LINC02488 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02488 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)111082994
GTEX Portal (Tissue expression)LINC02488
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02488
DMDM Disease mutations111082994
Blocks (Seattle)LINC02488
Protein Interaction databases
BioGRIDLINC02488
STRING (EMBL)LINC02488
ZODIACLINC02488
Ontologies - Pathways
Huge Navigator LINC02488 [HugePedia]
snp3D : Map Gene to Disease111082994
BioCentury BCIQLINC02488
ClinGenLINC02488
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD111082994
Clinical trialLINC02488
Miscellaneous
canSAR (ICR)LINC02488 (select the gene name)
DataMed IndexLINC02488
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02488
EVEXLINC02488
GoPubMedLINC02488
iHOPLINC02488
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:38:55 CEST 2019

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