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LINC02517 (long intergenic non-protein coding RNA 2517)

Identity

Other alias-
HGNC (Hugo) LINC02517
LocusID (NCBI) 105374374
Atlas_Id 80600
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 8320176 and ends at 8323965 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02517   53506
Cards
Entrez_Gene (NCBI)LINC02517  105374374  long intergenic non-protein coding RNA 2517
Aliases
GeneCards (Weizmann)LINC02517
Ensembl hg19 (Hinxton)ENSG00000249145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249145 [Gene_View]  ENSG00000249145 [Sequence]  chr4:8320176-8323965 [Contig_View]  LINC02517 [Vega]
ICGC DataPortalENSG00000249145
TCGA cBioPortalLINC02517
AceView (NCBI)LINC02517
Genatlas (Paris)LINC02517
WikiGenes105374374
SOURCE (Princeton)LINC02517
Genetics Home Reference (NIH)LINC02517
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02517  -     chr4:8320176-8323965 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02517  -     4p16.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02517 - 4p16.1 [CytoView hg19]  LINC02517 - 4p16.1 [CytoView hg38]
ImmunoBaseENSG00000249145
Mapping of homologs : NCBILINC02517 [Mapview hg19]  LINC02517 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI252664 BG217250 BX096935
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02517
Cluster EST : UnigeneHs.736748 [ NCBI ]
CGAP (NCI)Hs.736748
Alternative Splicing GalleryENSG00000249145
Gene ExpressionLINC02517 [ NCBI-GEO ]   LINC02517 [ EBI - ARRAY_EXPRESS ]   LINC02517 [ SEEK ]   LINC02517 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02517 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374374
GTEX Portal (Tissue expression)LINC02517
Human Protein AtlasENSG00000249145-LINC02517 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02517
DMDM Disease mutations105374374
Blocks (Seattle)LINC02517
Human Protein Atlas [tissue]ENSG00000249145-LINC02517 [tissue]
Protein Interaction databases
FunCoupENSG00000249145
BioGRIDLINC02517
STRING (EMBL)LINC02517
ZODIACLINC02517
Ontologies - Pathways
Huge Navigator LINC02517 [HugePedia]
snp3D : Map Gene to Disease105374374
BioCentury BCIQLINC02517
ClinGenLINC02517
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374374
Clinical trialLINC02517
Miscellaneous
canSAR (ICR)LINC02517 (select the gene name)
DataMed IndexLINC02517
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02517
EVEXLINC02517
GoPubMedLINC02517
iHOPLINC02517
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:38:59 CEST 2019

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