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LINC02542 (long intergenic non-protein coding RNA 2542)

Identity

Other alias-
HGNC (Hugo) LINC02542
LocusID (NCBI) 102724168
Atlas_Id 80285
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 81843781 and ends at 81933480 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02542   53576
Cards
Entrez_Gene (NCBI)LINC02542  102724168  long intergenic non-protein coding RNA 2542
Aliases
GeneCards (Weizmann)LINC02542
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:81843781-81933480 [Contig_View]  LINC02542 [Vega]
TCGA cBioPortalLINC02542
AceView (NCBI)LINC02542
Genatlas (Paris)LINC02542
WikiGenes102724168
SOURCE (Princeton)LINC02542
Genetics Home Reference (NIH)LINC02542
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02542  -     chr6:81843781-81933480 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02542  -     6q14.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02542 - 6q14.1 [CytoView hg19]  LINC02542 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBILINC02542 [Mapview hg19]  LINC02542 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA443454 DB182239
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02542
Cluster EST : UnigeneHs.485841 [ NCBI ]
CGAP (NCI)Hs.485841
Gene ExpressionLINC02542 [ NCBI-GEO ]   LINC02542 [ EBI - ARRAY_EXPRESS ]   LINC02542 [ SEEK ]   LINC02542 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02542 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724168
GTEX Portal (Tissue expression)LINC02542
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02542
DMDM Disease mutations102724168
Blocks (Seattle)LINC02542
Protein Interaction databases
BioGRIDLINC02542
STRING (EMBL)LINC02542
ZODIACLINC02542
Ontologies - Pathways
Huge Navigator LINC02542 [HugePedia]
snp3D : Map Gene to Disease102724168
BioCentury BCIQLINC02542
ClinGenLINC02542
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724168
Clinical trialLINC02542
Miscellaneous
canSAR (ICR)LINC02542 (select the gene name)
DataMed IndexLINC02542
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02542
EVEXLINC02542
GoPubMedLINC02542
iHOPLINC02542
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:39:03 CEST 2019

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